UHGV-0059420

Genome information

Genome length 31,637 bps

CDS count 42

Completeness 89.92% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0059420
vOTU ID	vOTU-035886
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_73081
BioSample	SAMEA2338704
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.14
Jumbo phage	No

Genome content
Genome length	31,637 bps
GC content	39.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.49%
Average CDS length	691.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0059420_1	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0059420_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0059420_2	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0059420_2	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0059420_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0059420_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0059420_2	COG	COG1511	NA	NA
UHGV-0059420_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0059420_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0059420_3	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0059420_3	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0059420_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0059420_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0059420_4	PHROG	phrog_5218	NA	unknown function
UHGV-0059420_4	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0059420_4	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0059420_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0059420_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0059420_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0059420_5	Structural annotation	PF11836	NA	NA
UHGV-0059420_6	PHROG	phrog_88	major tail protein	tail
UHGV-0059420_6	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0059420_6	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0059420_6	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0059420_7	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0059420_7	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0059420_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0059420_7	Structural annotation	TIGR01725	NA	NA
UHGV-0059420_8	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0059420_9	PHROG	phrog_19734	NA	unknown function
UHGV-0059420_9	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0059420_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0059420_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0059420_10	PHROG	phrog_749	NA	unknown function
UHGV-0059420_10	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0059420_10	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0059420_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0059420_11	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0059420_11	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0059420_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0059420_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0059420_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0059420_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0059420_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0059420_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0059420_12	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0059420_12	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0059420_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0059420_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0059420_12	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0059420_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0059420_13	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0059420_13	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0059420_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0059420_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0059420_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0059420_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0059420_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0059420_14	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0059420_14	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0059420_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0059420_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0059420_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0059420_14	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0059420_15	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0059420_15	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0059420_15	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0059420_15	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0059420_15	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0059420_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0059420_16	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0059420_16	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0059420_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0059420_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0059420_17	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-0059420_17	Structural annotation	TIGR01636	NA	NA
UHGV-0059420_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0059420_18	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0059420_18	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0059420_21	PHROG	phrog_824	NA	unknown function
UHGV-0059420_21	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0059420_21	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0059420_21	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0059420_21	Structural annotation	PF08774	NA	NA
UHGV-0059420_22	PHROG	phrog_24518	NA	unknown function
UHGV-0059420_22	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0059420_23	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0059420_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0059420_23	UniRef90	UniRef90_UPI001B3C6404	tyrosine-type recombinase/integrase	NA
UHGV-0059420_23	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0059420_23	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0059420_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0059420_23	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0059420_23	Structural annotation	PF00589, PF13495, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-0059420_24	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0059420_24	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0059420_24	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0059420_24	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0059420_24	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0059420_24	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0059420_25	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0059420_25	PHROG	phrog_5696	NA	unknown function
UHGV-0059420_25	UniRef90	UniRef90_UPI001B3C9C54	N-6 DNA methylase	NA
UHGV-0059420_25	eggNOG-mapper	1235802.C823_05701	N-6 DNA Methylase	NA
UHGV-0059420_25	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0059420_25	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0059420_25	Structural annotation	COG0286	NA	NA
UHGV-0059420_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0059420_26	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0059420_26	UniRef90	UniRef90_A0A3D3D7T1	ParB domain-containing protein	NA
UHGV-0059420_26	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-0059420_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0059420_26	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0059420_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0059420_26	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0059420_28	Structural annotation	COG1862	NA	NA
UHGV-0059420_29	PHROG	phrog_6058	NA	unknown function
UHGV-0059420_29	Structural annotation	NF033787	NA	NA
UHGV-0059420_30	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0059420_30	UniRef90	UniRef90_UPI0015F48AC0	Lar family restriction alleviation protein	NA
UHGV-0059420_30	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0059420_30	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0059420_31	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0059420_31	Structural annotation	PF15597	NA	NA
UHGV-0059420_32	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0059420_32	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0059420_32	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0059420_32	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0059420_32	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0059420_32	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0059420_32	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0059420_32	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0059420_36	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0059420_36	eggNOG-mapper	411471.SUBVAR_04675	COG NOG12663 non supervised orthologous group	NA
UHGV-0059420_36	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0059420_37	UniRef90	UniRef90_UPI001494A832	helix-turn-helix domain-containing protein	NA
UHGV-0059420_37	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0059420_37	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0059420_38	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0059420_38	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-0059420_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0059420_38	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0059420_39	PHROG	phrog_1914	NA	unknown function
UHGV-0059420_39	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0059420_39	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0059420_39	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0059420_39	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0059420_39	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0059420_40	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-0059420_40	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0059420_40	Structural annotation	PF18933, PF02883, MF_02248, NF008627, COG5435, COG2847	NA	NA
UHGV-0059420_41	KOfam	K14059	int; integrase	NA
UHGV-0059420_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0059420_41	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0059420_41	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0059420_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0059420_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0059420_41	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0059420_42	eggNOG-mapper	1321372.AQQB01000002_gene484	NA	NA