UHGV-0059444

Genome information

Genome length 38,183 bps

CDS count 55

Completeness 87.78% (medium-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0059444
vOTU ID	vOTU-023756
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_87088
BioSample	SAMEA2338820
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.52
Jumbo phage	No

Genome content
Genome length	38,183 bps
GC content	38.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	87.55%
Average CDS length	610.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0059444_1	PHROG	phrog_22212	NA	unknown function
UHGV-0059444_1	UniRef90	UniRef90_A0A6N7QKG7	Peptidase (Fragment)	NA
UHGV-0059444_1	eggNOG-mapper	257314.LJ_0324	gp58-like protein	NA
UHGV-0059444_1	COG	COG0845	Multidrug efflux pump subunit AcrA (membrane-fusion protein)	NA
UHGV-0059444_1	Structural annotation	PF05113, PF09327, NF033848, COG3500	NA	NA
UHGV-0059444_2	PHROG	phrog_1194	NA	unknown function
UHGV-0059444_2	UniRef90	UniRef90_A0A0R1VMM5	NA	NA
UHGV-0059444_2	eggNOG-mapper	257314.LJ_0323	NA	NA
UHGV-0059444_2	Pfam	PF20458	NA	DUF6711
UHGV-0059444_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0059444_3	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0059444_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0059444_3	UniRef90	UniRef90_A0A1Y3UPF8	Lytic transglycosylase	NA
UHGV-0059444_3	eggNOG-mapper	257314.LJ_0322	Phage tail tape measure protein TP901	NA
UHGV-0059444_3	COG	COG1511	NA	NA
UHGV-0059444_4	PHROG	phrog_2066	NA	unknown function
UHGV-0059444_4	UniRef90	UniRef90_A0A0R2GAJ5	NA	NA
UHGV-0059444_4	eggNOG-mapper	257314.LJ_0321	NA	NA
UHGV-0059444_5	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0059444_5	UniRef90	UniRef90_A0A0U5JYD4	Lj965 prophage protein	NA
UHGV-0059444_5	eggNOG-mapper	257314.LJ_0320	NA	NA
UHGV-0059444_5	Pfam	PF19591	NA	DUF6096
UHGV-0059444_5	Structural annotation	PF19591, TIGR01674	NA	NA
UHGV-0059444_6	PHROG	phrog_158	major tail protein	tail
UHGV-0059444_6	UniRef90	UniRef90_A0A517D6D7	Phage tail protein	NA
UHGV-0059444_6	eggNOG-mapper	257314.LJ_0319	Phage tail tube protein, TTP	NA
UHGV-0059444_6	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0059444_6	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0059444_7	UniRef90	UniRef90_A0A0R1UWN3	NA	NA
UHGV-0059444_7	eggNOG-mapper	257314.LJ_0318	NA	NA
UHGV-0059444_7	Structural annotation	PF05657	NA	NA
UHGV-0059444_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0059444_8	UniRef90	UniRef90_A0A0U5FDW1	HK97 gp10 family phage protein	NA
UHGV-0059444_8	eggNOG-mapper	257314.LJ_0317	NA	NA
UHGV-0059444_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0059444_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0059444_8	Structural annotation	TIGR01725	NA	NA
UHGV-0059444_9	PHROG	phrog_2168	NA	unknown function
UHGV-0059444_9	UniRef90	UniRef90_A0A0R1UW44	NA	NA
UHGV-0059444_9	eggNOG-mapper	257314.LJ_0316	NA	NA
UHGV-0059444_9	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0059444_10	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0059444_10	UniRef90	UniRef90_A0A1Y2URF0	Phage head-tail connector protein	NA
UHGV-0059444_10	eggNOG-mapper	257314.LJ_0315	NA	NA
UHGV-0059444_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0059444_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0059444_11	PHROG	phrog_29	major head protein	head and packaging
UHGV-0059444_11	UniRef90	UniRef90_A0A0U5JXZ6	Major capsid protein E	NA
UHGV-0059444_11	eggNOG-mapper	257314.LJ_0314	Phage major capsid protein E	NA
UHGV-0059444_11	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0059444_11	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0059444_12	PHROG	phrog_909	major head protein	head and packaging
UHGV-0059444_12	eggNOG-mapper	257314.LJ_0313	NA	NA
UHGV-0059444_13	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0059444_13	UniRef90	UniRef90_A0A0U5JZT0	Phage capsid and scaffold	NA
UHGV-0059444_13	eggNOG-mapper	257314.LJ_0312	NA	NA
UHGV-0059444_13	Pfam	PF14265	NA	DUF4355
UHGV-0059444_13	Structural annotation	PF14265	NA	NA
UHGV-0059444_14	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0059444_14	UniRef90	UniRef90_A0A256SSP7	Phage head morphogenesis protein	NA
UHGV-0059444_14	eggNOG-mapper	257314.LJ_0311	Phage Mu protein F like protein	NA
UHGV-0059444_14	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0059444_14	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0059444_14	COG	COG2369	NA	NA
UHGV-0059444_14	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0059444_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0059444_15	UniRef90	UniRef90_A0A0U5FDX6	Portal protein, phage associated	NA
UHGV-0059444_15	eggNOG-mapper	257314.LJ_0309	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0059444_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0059444_15	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0059444_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0059444_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0059444_16	PHROG	phrog_10250	NA	unknown function
UHGV-0059444_16	UniRef90	UniRef90_A0A1Y2UWM4	Terminase	NA
UHGV-0059444_16	eggNOG-mapper	257314.LJ_0308	Terminase-like family	NA
UHGV-0059444_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0059444_16	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0059444_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0059444_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0059444_16	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0059444_17	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0059444_17	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0059444_17	UniRef90	UniRef90_A0A256SRL5	Terminase	NA
UHGV-0059444_17	eggNOG-mapper	257314.LJ_0307	Terminase small subunit	NA
UHGV-0059444_17	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0059444_17	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0059444_17	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0059444_17	Structural annotation	PF03592, PF06056, COG3728	NA	NA
UHGV-0059444_18	PHROG	phrog_10804	NA	unknown function
UHGV-0059444_19	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0059444_19	UniRef90	UniRef90_A0A256SRS9	HTH_59 domain-containing protein	NA
UHGV-0059444_19	eggNOG-mapper	1423790.BN53_02905	NA	NA
UHGV-0059444_19	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0059444_19	Structural annotation	PF20038, NF040990, COG3311	NA	NA
UHGV-0059444_20	PHROG	phrog_31530	NA	unknown function
UHGV-0059444_21	UniRef90	UniRef90_R9WK24	Chorismate synthase	NA
UHGV-0059444_21	eggNOG-mapper	1423814.HMPREF0549_1776	NA	NA
UHGV-0059444_23	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0059444_23	UniRef90	UniRef90_C7XUU7	Phage transcriptional regulator, ArpU family	NA
UHGV-0059444_23	eggNOG-mapper	944562.HMPREF9102_0402	NA	NA
UHGV-0059444_23	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0059444_25	PHROG	phrog_28913	NA	unknown function
UHGV-0059444_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0059444_26	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0059444_26	UniRef90	UniRef90_A0A7L6BIU5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0059444_26	eggNOG-mapper	349123.Lreu23DRAFT_3099	Endodeoxyribonuclease RusA	NA
UHGV-0059444_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0059444_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0059444_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0059444_27	PHROG	phrog_419	NA	unknown function
UHGV-0059444_27	UniRef90	UniRef90_UPI001E5CE0B6	PGDYG domain-containing protein	NA
UHGV-0059444_27	eggNOG-mapper	349123.Lreu23DRAFT_3098	NA	NA
UHGV-0059444_27	Structural annotation	PF14083	NA	NA
UHGV-0059444_30	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0059444_30	UniRef90	UniRef90_A0A1Y4P9Q8	SAM-dependent methyltransferase	NA
UHGV-0059444_30	eggNOG-mapper	1423814.HMPREF0549_0160	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0059444_30	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0059444_30	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0059444_30	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0059444_30	Structural annotation	PF13649, MF_01813, TIGR01934, COG2226	NA	NA
UHGV-0059444_33	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0059444_33	UniRef90	UniRef90_A0A1Y4PBJ6	ORF6C domain-containing protein	NA
UHGV-0059444_33	eggNOG-mapper	565664.EFXG_01142	ORF6C domain	NA
UHGV-0059444_33	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0059444_33	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0059444_33	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0059444_33	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0059444_33	Structural annotation	PF10552, PF10543, TIGR02681, COG3646	NA	NA
UHGV-0059444_35	PHROG	phrog_27121	NA	unknown function
UHGV-0059444_36	PHROG	phrog_26060	NA	unknown function
UHGV-0059444_36	eggNOG-mapper	557436.Lreu_0814	NA	NA
UHGV-0059444_37	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0059444_37	UniRef90	UniRef90_UPI001CDAD317	helix-turn-helix domain-containing protein	NA
UHGV-0059444_37	eggNOG-mapper	557436.Lreu_0813	NA	NA
UHGV-0059444_37	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0059444_37	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0059444_37	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0059444_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0059444_37	Structural annotation	PF13730, MF_01819, NF038251, COG1846	NA	NA
UHGV-0059444_38	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0059444_38	UniRef90	UniRef90_A0A828RDL7	NA	NA
UHGV-0059444_38	eggNOG-mapper	557436.Lreu_0812	NA	NA
UHGV-0059444_38	Pfam	PF12684	NA	DUF3799
UHGV-0059444_38	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0059444_38	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0059444_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0059444_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0059444_39	UniRef90	UniRef90_A0A1S9AST8	Recombinase RecT	NA
UHGV-0059444_39	eggNOG-mapper	557436.Lreu_0811	RecT family	NA
UHGV-0059444_39	Pfam	PF03837	RecT family	RecT
UHGV-0059444_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0059444_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0059444_39	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0059444_40	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0059444_40	UniRef90	UniRef90_A0A828RH79	HTH cro/C1-type domain-containing protein	NA
UHGV-0059444_40	eggNOG-mapper	485916.Dtox_3657	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0059444_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0059444_40	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0059444_41	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0059444_41	UniRef90	UniRef90_UPI0007BF7186	NA	NA
UHGV-0059444_41	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0059444_41	Structural annotation	COG2250	NA	NA
UHGV-0059444_45	PHROG	phrog_585	NA	unknown function
UHGV-0059444_45	UniRef90	UniRef90_A0A0U5JX49	NA	NA
UHGV-0059444_45	eggNOG-mapper	1423758.BN55_04340	NA	NA
UHGV-0059444_45	Pfam	PF10711	NA	DUF2513
UHGV-0059444_45	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0059444_46	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0059444_46	UniRef90	UniRef90_UPI000B981AE3	Rha family transcriptional regulator	NA
UHGV-0059444_46	eggNOG-mapper	438780.D2KRD8_9CAUD	DNA binding	NA
UHGV-0059444_46	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0059444_46	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0059444_46	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0059444_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0059444_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0059444_48	UniRef90	UniRef90_A0A079YTG7	Transcriptional regulator	NA
UHGV-0059444_48	eggNOG-mapper	1123298.KB904077_gene435	Helix-turn-helix XRE-family like proteins	NA
UHGV-0059444_48	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0059444_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0059444_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0059444_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0059444_49	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0059444_49	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0059444_49	UniRef90	UniRef90_A0A317GH56	XRE family transcriptional regulator	NA
UHGV-0059444_49	eggNOG-mapper	349123.Lreu23DRAFT_3902	Peptidase S24-like	NA
UHGV-0059444_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0059444_49	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0059444_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0059444_49	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0059444_50	UniRef90	UniRef90_UPI001CDC6F1F	SHOCT domain-containing protein	NA
UHGV-0059444_50	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0059444_51	PHROG	phrog_33215	NA	unknown function
UHGV-0059444_51	eggNOG-mapper	525309.HMPREF0494_1864	NA	NA
UHGV-0059444_52	PHROG	phrog_24502	zinc-finger domain protein	other
UHGV-0059444_52	UniRef90	UniRef90_A0A062X9R4	Type III secretion protein, HrcV family	NA
UHGV-0059444_52	eggNOG-mapper	1605.Lani381_0823	NA	NA
UHGV-0059444_53	PHROG	phrog_750	NA	unknown function
UHGV-0059444_53	eggNOG-mapper	1158604.I591_00382	NA	NA
UHGV-0059444_53	Structural annotation	PF03444, COG5045	NA	NA
UHGV-0059444_54	PHROG	phrog_7823	NA	unknown function
UHGV-0059444_54	eggNOG-mapper	349123.Lreu23DRAFT_4041	NA	NA
UHGV-0059444_55	KOfam	K14059	int; integrase	NA
UHGV-0059444_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0059444_55	UniRef90	UniRef90_A0A1Y3UJY3	Tyr recombinase domain-containing protein	NA
UHGV-0059444_55	eggNOG-mapper	575594.ACOH01000003_gene837	Belongs to the 'phage' integrase family	NA
UHGV-0059444_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0059444_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0059444_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0059444_55	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA