UHGV-0059499

Genome information

Genome length 32,809 bps

CDS count 45

Completeness 93.25% (high-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0059499
vOTU ID	vOTU-060068
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_101240
BioSample	SAMEA2466957
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.25% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.71
Jumbo phage	No

Genome content
Genome length	32,809 bps
GC content	39.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.80%
Average CDS length	665.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0059499_1	KOfam	K14059	int; integrase	NA
UHGV-0059499_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0059499_1	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0059499_1	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0059499_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0059499_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0059499_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0059499_2	eggNOG-mapper	1232447.BAHW02000014_gene830	NA	NA
UHGV-0059499_4	PHROG	phrog_1914	NA	unknown function
UHGV-0059499_4	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0059499_4	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0059499_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0059499_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0059499_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0059499_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0059499_5	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0059499_5	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-0059499_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0059499_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0059499_5	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0059499_6	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0059499_6	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0059499_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0059499_6	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0059499_8	PHROG	phrog_585	NA	unknown function
UHGV-0059499_8	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-0059499_8	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0059499_8	Pfam	PF10711	NA	DUF2513
UHGV-0059499_8	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0059499_10	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0059499_10	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0059499_10	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0059499_10	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0059499_10	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0059499_10	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0059499_10	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0059499_10	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0059499_12	UniRef90	UniRef90_UPI0015F48AC0	Lar family restriction alleviation protein	NA
UHGV-0059499_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0059499_12	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0059499_13	PHROG	phrog_6058	NA	unknown function
UHGV-0059499_13	Structural annotation	NF033787	NA	NA
UHGV-0059499_14	Structural annotation	COG1862	NA	NA
UHGV-0059499_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0059499_16	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0059499_16	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-0059499_16	eggNOG-mapper	718252.FP2_00920	ParB-like nuclease domain	NA
UHGV-0059499_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0059499_16	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0059499_16	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0059499_16	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0059499_17	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0059499_17	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0059499_17	UniRef90	UniRef90_UPI001B3C6DA9	N-6 DNA methylase	NA
UHGV-0059499_17	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0059499_17	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0059499_17	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0059499_17	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0059499_17	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0059499_18	PHROG	phrog_824	NA	unknown function
UHGV-0059499_18	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0059499_18	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0059499_18	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0059499_18	Structural annotation	PF08774	NA	NA
UHGV-0059499_20	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0059499_20	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0059499_20	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0059499_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0059499_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0059499_20	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0059499_21	PHROG	phrog_8684	NA	unknown function
UHGV-0059499_21	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-0059499_21	eggNOG-mapper	563031.HMPREF0666_01127	YopX protein	NA
UHGV-0059499_21	Pfam	PF09643	YopX protein	YopX
UHGV-0059499_21	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0059499_21	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0059499_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0059499_24	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0059499_24	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0059499_25	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-0059499_25	Structural annotation	TIGR01636	NA	NA
UHGV-0059499_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0059499_26	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0059499_26	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0059499_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0059499_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0059499_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0059499_27	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0059499_27	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0059499_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0059499_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0059499_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0059499_28	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0059499_28	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0059499_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0059499_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0059499_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0059499_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0059499_29	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0059499_29	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0059499_29	UniRef90	UniRef90_A0A356CYE0	N-6 DNA methylase	NA
UHGV-0059499_29	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-0059499_29	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0059499_29	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0059499_29	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0059499_29	Structural annotation	PF02384, PF01420, MF_01872, TIGR00497, COG0286, COG0732	NA	NA
UHGV-0059499_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0059499_30	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0059499_30	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0059499_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0059499_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0059499_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0059499_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0059499_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0059499_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0059499_31	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0059499_31	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0059499_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0059499_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0059499_31	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0059499_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0059499_32	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0059499_32	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0059499_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0059499_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0059499_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0059499_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0059499_33	PHROG	phrog_749	NA	unknown function
UHGV-0059499_33	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0059499_33	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0059499_34	PHROG	phrog_19734	NA	unknown function
UHGV-0059499_34	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0059499_34	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0059499_34	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0059499_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0059499_35	eggNOG-mapper	272623.L59277	NA	NA
UHGV-0059499_35	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0059499_36	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0059499_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0059499_36	Structural annotation	TIGR01725	NA	NA
UHGV-0059499_37	PHROG	phrog_88	major tail protein	tail
UHGV-0059499_37	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0059499_37	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0059499_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0059499_37	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0059499_38	Structural annotation	PF11836	NA	NA
UHGV-0059499_39	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0059499_39	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0059499_39	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0059499_39	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0059499_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0059499_39	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0059499_39	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0059499_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0059499_40	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0059499_40	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0059499_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0059499_40	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0059499_41	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0059499_41	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0059499_41	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0059499_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0059499_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0059499_41	COG	COG1511	NA	NA
UHGV-0059499_41	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0059499_42	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0059499_44	PHROG	phrog_1863	NA	unknown function
UHGV-0059499_44	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0059499_44	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0059499_45	PHROG	phrog_443	holin	lysis
UHGV-0059499_45	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0059499_45	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0059499_45	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0059499_45	Structural annotation	PF16945	NA	NA