UHGV-0059520

Genome information

Genome length 38,106 bps

CDS count 64

Completeness 93.47% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0059520
vOTU ID	vOTU-012749
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_69364
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.47% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.22
Jumbo phage	No

Genome content
Genome length	38,106 bps
GC content	50.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.34%
Average CDS length	541.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0059520_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0059520_1	UniRef90	UniRef90_A0A127SJJ7	Put_anti_recept: phage minor structural protein, N-terminal region protein (Fragment)	NA
UHGV-0059520_1	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0059520_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0059520_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0059520_1	COG	COG4926	Phage-related protein	NA
UHGV-0059520_1	Structural annotation	PF14594, TIGR01665, COG3500	NA	NA
UHGV-0059520_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0059520_2	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0059520_2	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0059520_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0059520_3	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0059520_3	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0059520_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0059520_4	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0059520_4	UniRef90	UniRef90_A0A7D4FJN5	HNH endonuclease	NA
UHGV-0059520_4	eggNOG-mapper	1423775.BAMN01000011_gene594	HNH endonuclease domain protein	NA
UHGV-0059520_4	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0059520_4	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0059520_4	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0059520_5	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0059520_5	UniRef90	UniRef90_A0A1P8BMM1	Tail tapemeasure protein	NA
UHGV-0059520_5	eggNOG-mapper	545697.HMPREF0216_02859	domain protein	NA
UHGV-0059520_5	COG	COG1511	NA	NA
UHGV-0059520_5	Structural annotation	PF20155	NA	NA
UHGV-0059520_7	PHROG	phrog_18646	NA	unknown function
UHGV-0059520_8	PHROG	phrog_885	major tail protein	tail
UHGV-0059520_8	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0059520_8	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0059520_8	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0059520_9	Structural annotation	PF11367	NA	NA
UHGV-0059520_10	PHROG	phrog_17977	NA	unknown function
UHGV-0059520_10	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0059520_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0059520_13	PHROG	phrog_544	major head protein	head and packaging
UHGV-0059520_13	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0059520_13	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0059520_13	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0059520_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0059520_14	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0059520_14	Structural annotation	PF06810	NA	NA
UHGV-0059520_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0059520_15	UniRef90	UniRef90_UPI001411BC8C	HK97 gp10 family phage protein	NA
UHGV-0059520_15	eggNOG-mapper	1443125.Z962_05620	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0059520_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0059520_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0059520_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0059520_16	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0059520_16	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0059520_16	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0059520_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0059520_16	COG	COG2369	NA	NA
UHGV-0059520_16	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0059520_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0059520_18	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0059520_18	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0059520_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0059520_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0059520_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0059520_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0059520_19	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0059520_19	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0059520_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0059520_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0059520_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0059520_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0059520_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0059520_21	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0059520_21	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0059520_21	UniRef90	UniRef90_A0A101WI32	Methyltransferase	NA
UHGV-0059520_21	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0059520_21	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0059520_21	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0059520_21	COG	COG0863	DNA modification methylase	NA
UHGV-0059520_21	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0059520_22	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0059520_22	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0059520_22	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-0059520_22	eggNOG-mapper	1211035.CD30_13045	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0059520_22	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0059520_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0059520_22	COG	COG0863	DNA modification methylase	NA
UHGV-0059520_22	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0059520_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0059520_24	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0059520_24	Pfam	PF07374	NA	DUF1492
UHGV-0059520_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0059520_24	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0059520_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0059520_30	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0059520_30	UniRef90	UniRef90_A0A379C663	Holliday junction resolvase	NA
UHGV-0059520_30	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0059520_30	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0059520_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0059520_30	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0059520_31	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0059520_31	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0059520_31	UniRef90	UniRef90_UPI0009E1B041	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0059520_31	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0059520_31	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0059520_31	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0059520_31	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0059520_31	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0059520_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0059520_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0059520_33	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0059520_33	eggNOG-mapper	657322.FPR_24250	Single-stranded DNA-binding protein	NA
UHGV-0059520_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0059520_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0059520_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0059520_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0059520_33	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0059520_34	PHROG	phrog_9804	NA	unknown function
UHGV-0059520_34	Structural annotation	PF11417	NA	NA
UHGV-0059520_35	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0059520_35	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0059520_35	eggNOG-mapper	749413.E5DV82_9VIRU	calcium ion binding	NA
UHGV-0059520_35	Pfam	PF19808	NA	DUF6291
UHGV-0059520_35	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0059520_35	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0059520_35	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0059520_36	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0059520_36	UniRef90	UniRef90_UPI0012DD1D82	MBL fold metallo-hydrolase	NA
UHGV-0059520_36	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0059520_36	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0059520_36	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0059520_36	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0059520_37	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0059520_37	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0059520_37	UniRef90	UniRef90_A0A329URJ6	Recombinase	NA
UHGV-0059520_37	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0059520_37	Pfam	PF03837	RecT family	RecT
UHGV-0059520_37	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0059520_37	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0059520_37	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0059520_38	PHROG	phrog_674	NA	unknown function
UHGV-0059520_38	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-0059520_38	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0059520_38	Pfam	PF07083	NA	DUF1351
UHGV-0059520_38	Structural annotation	PF07083	NA	NA
UHGV-0059520_42	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0059520_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0059520_42	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0059520_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0059520_43	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0059520_43	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0059520_43	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0059520_43	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0059520_43	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0059520_43	COG	COG3617	Prophage antirepressor	NA
UHGV-0059520_43	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0059520_44	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0059520_44	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0059520_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0059520_45	UniRef90	UniRef90_UPI001966F1BB	helix-turn-helix transcriptional regulator	NA
UHGV-0059520_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0059520_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0059520_45	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0059520_46	UniRef90	UniRef90_UPI001F46B012	SAP domain-containing protein	NA
UHGV-0059520_46	eggNOG-mapper	500635.MITSMUL_05163	NA	NA
UHGV-0059520_47	KOfam	K14059	int; integrase	NA
UHGV-0059520_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0059520_47	UniRef90	UniRef90_A0A1Y4T0F9	Tyr recombinase domain-containing protein	NA
UHGV-0059520_47	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0059520_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0059520_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0059520_47	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0059520_49	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0059520_50	Structural annotation	PF12510	NA	NA
UHGV-0059520_51	PHROG	phrog_20016	NA	unknown function
UHGV-0059520_51	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0059520_51	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0059520_51	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0059520_52	PHROG	phrog_16490	NA	unknown function
UHGV-0059520_52	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0059520_53	PHROG	phrog_22984	NA	unknown function
UHGV-0059520_54	PHROG	phrog_21718	NA	unknown function
UHGV-0059520_54	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0059520_55	PHROG	phrog_3754	NA	unknown function
UHGV-0059520_55	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0059520_56	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0059520_56	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0059520_56	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0059520_57	PHROG	phrog_13256	NA	unknown function
UHGV-0059520_57	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0059520_58	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0059520_59	KOfam	K07273	acm; lysozyme	NA
UHGV-0059520_59	PHROG	phrog_291	endolysin	lysis
UHGV-0059520_59	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0059520_59	eggNOG-mapper	877424.ATWC01000009_gene1193	Glycosyl hydrolases family 25	NA
UHGV-0059520_59	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0059520_59	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0059520_59	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0059520_59	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0059520_60	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0059520_60	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0059520_60	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0059520_61	PHROG	phrog_24267	NA	unknown function
UHGV-0059520_61	UniRef90	UniRef90_A0A7Y9PIW8	Microcystin-dependent protein	NA
UHGV-0059520_61	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0059520_61	COG	COG4675	Phage tail collar domain	NA
UHGV-0059520_61	Structural annotation	COG4675	NA	NA
UHGV-0059520_63	UniRef90	UniRef90_UPI000C79F998	H-type lectin domain-containing protein	NA
UHGV-0059520_63	Structural annotation	PF10651, NF041074	NA	NA
UHGV-0059520_64	eggNOG-mapper	1118059.CAHC01000003_gene810	Phage minor structural protein	NA
UHGV-0059520_64	COG	COG4926	Phage-related protein	NA