UHGV-0059615

Genome information

vOTU vOTU-021913

Genome length 26,565 bps

CDS count 37

Completeness 71.53% (medium-quality)

geNomad score 0.9527

Prediction confidence Confident

Genome information
Genome ID	UHGV-0059615
vOTU ID	vOTU-021913
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_88727
BioSample	SAMEA2466932
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9527
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.66
Jumbo phage	No

Genome content
Genome length	26,565 bps
GC content	43.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	90.87%
Average CDS length	654.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0059615_1	KOfam	K14059	int; integrase	NA
UHGV-0059615_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0059615_1	UniRef90	UniRef90_A0A351ZCA8	Site-specific integrase	NA
UHGV-0059615_1	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0059615_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0059615_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0059615_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0059615_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0059615_2	KOfam	K19157	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	NA
UHGV-0059615_2	PHROG	phrog_7251	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0059615_2	UniRef90	UniRef90_UPI001C0F591B	type II toxin-antitoxin system YafQ family toxin	NA
UHGV-0059615_2	eggNOG-mapper	1235799.C818_02981	Bacterial toxin of type II toxin-antitoxin system, YafQ	NA
UHGV-0059615_2	Pfam	PF15738	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
UHGV-0059615_2	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0059615_2	COG	COG3041	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	NA
UHGV-0059615_2	Structural annotation	PF15738, TIGR00053, COG3041	NA	NA
UHGV-0059615_3	UniRef90	UniRef90_R7GTI6	Addiction module antitoxin RelB/DinJ family	NA
UHGV-0059615_3	eggNOG-mapper	1282887.AUJG01000001_gene1581	RelB antitoxin	NA
UHGV-0059615_3	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0059615_6	PHROG	phrog_23933	NA	unknown function
UHGV-0059615_6	UniRef90	UniRef90_A0A1V4VNI6	Guanylate cyclase domain-containing protein	NA
UHGV-0059615_6	eggNOG-mapper	1292035.H476_1482	NA	NA
UHGV-0059615_6	Structural annotation	PF00211, NF033576, COG2114	NA	NA
UHGV-0059615_7	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0059615_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0059615_7	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0059615_8	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0059615_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0059615_8	UniRef90	UniRef90_A0A4S2A9B1	XRE family transcriptional regulator	NA
UHGV-0059615_8	eggNOG-mapper	1127131.WEISSC39_00915	Xre family transcriptional regulator	NA
UHGV-0059615_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0059615_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0059615_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0059615_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0059615_12	PHROG	phrog_1733	NA	unknown function
UHGV-0059615_12	eggNOG-mapper	314724.BT0432	NA	NA
UHGV-0059615_12	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0059615_12	Structural annotation	PF03677	NA	NA
UHGV-0059615_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0059615_13	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-0059615_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0059615_13	Structural annotation	PF05565	NA	NA
UHGV-0059615_14	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0059615_14	UniRef90	UniRef90_A0A348ZC83	ATP-binding protein	NA
UHGV-0059615_14	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0059615_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0059615_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0059615_15	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0059615_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0059615_15	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-0059615_15	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0059615_15	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0059615_15	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0059615_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0059615_15	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0059615_15	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0059615_16	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0059615_16	UniRef90	UniRef90_A0A348ZC81	VRR-NUC domain-containing protein	NA
UHGV-0059615_16	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0059615_16	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0059615_16	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0059615_17	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0059615_17	UniRef90	UniRef90_UPI0006852132	NA	NA
UHGV-0059615_17	eggNOG-mapper	1410670.JHXF01000015_gene2272	NA	NA
UHGV-0059615_17	Pfam	PF05037	NA	DUF669
UHGV-0059615_17	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0059615_18	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0059615_18	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0059615_18	UniRef90	UniRef90_A0A6N4ALN1	SF3 helicase domain-containing protein	NA
UHGV-0059615_18	eggNOG-mapper	1347392.CCEZ01000005_gene1217	Phage plasmid primase, P4 family	NA
UHGV-0059615_18	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0059615_18	Pfam	PF19263	NA	DUF5906
UHGV-0059615_18	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0059615_18	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0059615_18	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0059615_18	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0059615_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0059615_20	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0059615_20	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0059615_20	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0059615_21	eggNOG-mapper	768710.DesyoDRAFT_5186	NA	NA
UHGV-0059615_21	Structural annotation	PF15931, NF001462, COG2974	NA	NA
UHGV-0059615_23	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0059615_23	UniRef90	UniRef90_UPI0004BAB6EB	DNA-packaging protein	NA
UHGV-0059615_23	eggNOG-mapper	445972.ANACOL_01838	DNA-packaging protein gp3	NA
UHGV-0059615_23	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0059615_23	Structural annotation	PF16677	NA	NA
UHGV-0059615_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0059615_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0059615_24	UniRef90	UniRef90_A0A0X8VAD6	Terminase-like family protein	NA
UHGV-0059615_24	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0059615_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0059615_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0059615_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0059615_24	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0059615_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0059615_25	UniRef90	UniRef90_A0A1C6FMT2	Phage portal protein, putative, A118 family	NA
UHGV-0059615_25	eggNOG-mapper	997296.PB1_16244	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0059615_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0059615_25	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0059615_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0059615_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0059615_26	UniRef90	UniRef90_A0A1C6FMR4	Phage minor capsid protein 2	NA
UHGV-0059615_26	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0059615_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0059615_26	Pfam	PF15640	Metallopeptidase toxin 4	Tox-MPTase4
UHGV-0059615_26	COG	COG2369	NA	NA
UHGV-0059615_26	Structural annotation	PF06152	NA	NA
UHGV-0059615_27	Structural annotation	PF00677, NF009627, COG3277	NA	NA
UHGV-0059615_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0059615_28	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-0059615_28	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0059615_29	PHROG	phrog_267	major head protein	head and packaging
UHGV-0059615_29	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0059615_29	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0059615_29	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0059615_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0059615_30	UniRef90	UniRef90_F5L4I5	Protein gp8	NA
UHGV-0059615_30	eggNOG-mapper	986075.CathTA2_0698	NA	NA
UHGV-0059615_31	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0059615_31	UniRef90	UniRef90_UPI001DCE9966	minor capsid protein	NA
UHGV-0059615_31	eggNOG-mapper	1134413.ANNK01000120_gene2023	Minor capsid protein	NA
UHGV-0059615_31	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0059615_31	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0059615_31	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0059615_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0059615_32	UniRef90	UniRef90_A0A355V0F3	Minor capsid protein	NA
UHGV-0059615_32	eggNOG-mapper	1123252.ATZF01000002_gene2575	Minor capsid protein	NA
UHGV-0059615_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0059615_32	Structural annotation	PF11114	NA	NA
UHGV-0059615_33	Structural annotation	PF12691	NA	NA
UHGV-0059615_34	eggNOG-mapper	411471.SUBVAR_06988	NA	NA
UHGV-0059615_35	KOfam	K07497	K07497; putative transposase	NA
UHGV-0059615_35	PHROG	phrog_157	transposase	integration and excision
UHGV-0059615_35	UniRef90	UniRef90_A0A1C6FWJ4	Integrase core domain	NA
UHGV-0059615_35	eggNOG-mapper	1235835.C814_00427	NA	NA
UHGV-0059615_35	Pfam	PF00665	Integrase core domain	rve
UHGV-0059615_35	Pfam	PF13683	Integrase core domain	rve_3
UHGV-0059615_35	NCBIFam	NF033516.0	IS3 family transposase	NA
UHGV-0059615_35	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0059615_35	Structural annotation	PF00665, PF13276, PF13333, NF033516, COG2801	NA	NA
UHGV-0059615_36	KOfam	K07483	K07483; transposase	NA
UHGV-0059615_36	PHROG	phrog_151	transposase	integration and excision
UHGV-0059615_36	UniRef90	UniRef90_A0A1C6FVT9	Transposase	NA
UHGV-0059615_36	eggNOG-mapper	608534.GCWU000341_01646	Transposase	NA
UHGV-0059615_36	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0059615_36	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0059615_36	Structural annotation	PF02796, MF_00674, NF006928, COG3415	NA	NA
UHGV-0059615_37	UniRef90	UniRef90_A0A368YXS1	DDE family transposase	NA
UHGV-0059615_37	eggNOG-mapper	572479.Hprae_1407	PFAM Transposase DDE domain	NA
UHGV-0059615_37	COG	COG3385	IS4 transposase InsG	NA