UHGV-0059654

Genome information

Genome length 35,393 bps

CDS count 56

Completeness 99.77% (high-quality)

geNomad score 0.9691

Prediction confidence Confident

Genome information
Genome ID	UHGV-0059654
vOTU ID	vOTU-013879
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_76376
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.77% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9691
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.49
Jumbo phage	No

Genome content
Genome length	35,393 bps
GC content	40.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.73%
Average CDS length	577.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0059654_1	UniRef90	UniRef90_UPI0011CCA30B	prolipoprotein diacylglyceryl transferase	NA
UHGV-0059654_1	COG	COG0682	Prolipoprotein diacylglyceryltransferase	NA
UHGV-0059654_2	KOfam	K14059	int; integrase	NA
UHGV-0059654_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0059654_2	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-0059654_2	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0059654_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0059654_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0059654_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0059654_3	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0059654_4	PHROG	phrog_1914	NA	unknown function
UHGV-0059654_4	UniRef90	UniRef90_A0A2N0ULV1	Peptidase_M78 domain-containing protein	NA
UHGV-0059654_4	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0059654_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0059654_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0059654_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0059654_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0059654_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0059654_5	UniRef90	UniRef90_A0A2N0ULR3	HTH-type transcriptional regulator ImmR	NA
UHGV-0059654_5	eggNOG-mapper	649747.HMPREF0083_01078	Transcriptional regulator	NA
UHGV-0059654_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0059654_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0059654_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0059654_6	UniRef90	UniRef90_A0A2N0ULV0	Helix-turn-helix domain protein	NA
UHGV-0059654_6	eggNOG-mapper	445335.CBN_3090	Helix-turn-helix domain	NA
UHGV-0059654_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0059654_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0059654_7	PHROG	phrog_3773	NA	unknown function
UHGV-0059654_7	Structural annotation	PF01423, MF_00257, NF041667	NA	NA
UHGV-0059654_8	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0059654_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0059654_8	UniRef90	UniRef90_A0A374N3U7	XRE family transcriptional regulator	NA
UHGV-0059654_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0059654_8	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0059654_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0059654_10	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0059654_10	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0059654_10	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0059654_10	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0059654_10	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0059654_13	Structural annotation	PF04570, COG2075	NA	NA
UHGV-0059654_14	PHROG	phrog_674	NA	unknown function
UHGV-0059654_14	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0059654_14	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0059654_14	Pfam	PF07083	NA	DUF1351
UHGV-0059654_14	Structural annotation	PF07083	NA	NA
UHGV-0059654_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0059654_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0059654_15	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-0059654_15	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0059654_15	Pfam	PF03837	RecT family	RecT
UHGV-0059654_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0059654_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0059654_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0059654_16	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0059654_16	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0059654_16	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-0059654_16	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0059654_16	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0059654_16	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0059654_16	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0059654_17	PHROG	phrog_398	NA	unknown function
UHGV-0059654_17	UniRef90	UniRef90_UPI000C7B20DA	putative HNHc nuclease	NA
UHGV-0059654_17	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-0059654_17	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0059654_17	Structural annotation	PF16784	NA	NA
UHGV-0059654_18	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0059654_18	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-0059654_18	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0059654_18	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0059654_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0059654_18	Structural annotation	PF14297	NA	NA
UHGV-0059654_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0059654_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0059654_19	UniRef90	UniRef90_A0A374MYR7	IstB_IS21 domain-containing protein	NA
UHGV-0059654_19	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0059654_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0059654_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0059654_19	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0059654_20	PHROG	phrog_824	NA	unknown function
UHGV-0059654_20	UniRef90	UniRef90_A0A374MXE9	VRR-NUC domain-containing protein	NA
UHGV-0059654_20	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-0059654_20	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0059654_20	Structural annotation	PF08774	NA	NA
UHGV-0059654_21	UniRef90	UniRef90_A0A374NAD2	GIY-YIG domain-containing protein	NA
UHGV-0059654_21	eggNOG-mapper	1078085.HMPREF1210_01161	GIY-YIG catalytic domain	NA
UHGV-0059654_21	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0059654_21	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-0059654_24	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0059654_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0059654_24	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-0059654_24	eggNOG-mapper	935845.JADQ01000015_gene3206	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0059654_24	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0059654_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0059654_24	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0059654_24	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0059654_26	Structural annotation	TIGR01636	NA	NA
UHGV-0059654_27	PHROG	phrog_3634	NA	unknown function
UHGV-0059654_27	eggNOG-mapper	411459.RUMOBE_00941	COG NOG22561 non supervised orthologous group	NA
UHGV-0059654_27	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0059654_27	Structural annotation	PF10137, MF_03036, NF009970, COG3613	NA	NA
UHGV-0059654_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0059654_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0059654_28	UniRef90	UniRef90_A0A2N0UXP4	Terminase small subunit	NA
UHGV-0059654_28	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0059654_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0059654_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0059654_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0059654_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0059654_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0059654_29	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-0059654_29	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0059654_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0059654_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0059654_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0059654_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0059654_30	UniRef90	UniRef90_A0A3D0XB31	Capsid protein	NA
UHGV-0059654_30	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0059654_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0059654_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0059654_31	UniRef90	UniRef90_A0A412UNH8	Minor capsid protein	NA
UHGV-0059654_31	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0059654_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0059654_31	COG	COG2369	NA	NA
UHGV-0059654_31	Structural annotation	PF06152	NA	NA
UHGV-0059654_33	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0059654_33	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0059654_33	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0059654_34	PHROG	phrog_2616	NA	unknown function
UHGV-0059654_34	Structural annotation	PF01281	NA	NA
UHGV-0059654_35	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0059654_35	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0059654_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-0059654_36	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-0059654_36	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0059654_36	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0059654_37	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0059654_38	PHROG	phrog_8710	NA	unknown function
UHGV-0059654_38	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0059654_38	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0059654_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0059654_39	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0059654_40	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0059654_40	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0059654_40	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0059654_40	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0059654_40	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0059654_41	PHROG	phrog_820	major tail protein	tail
UHGV-0059654_41	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0059654_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0059654_42	PHROG	phrog_8300	NA	unknown function
UHGV-0059654_42	eggNOG-mapper	483218.BACPEC_01148	NA	NA
UHGV-0059654_42	Structural annotation	PF06854	NA	NA
UHGV-0059654_43	PHROG	phrog_8355	NA	unknown function
UHGV-0059654_43	UniRef90	UniRef90_UPI001C0B4BD8	Gp15 family bacteriophage protein	NA
UHGV-0059654_43	eggNOG-mapper	1262449.CP6013_3207	NA	NA
UHGV-0059654_44	PHROG	phrog_5319	outer membrane protein	other
UHGV-0059654_44	UniRef90	UniRef90_A0A1Q6JN93	zinc_ribbon_2 domain-containing protein	NA
UHGV-0059654_44	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0059654_44	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0059654_44	COG	COG3103	NA	NA
UHGV-0059654_44	Structural annotation	PF03843, PF12773, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0059654_45	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0059654_45	eggNOG-mapper	445971.ANASTE_01016	NA	NA
UHGV-0059654_45	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0059654_47	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0059654_47	UniRef90	UniRef90_UPI00189A9092	ORF6N domain-containing protein	NA
UHGV-0059654_47	eggNOG-mapper	272563.CD630_29480	ORF6N domain	NA
UHGV-0059654_47	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0059654_47	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0059654_48	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0059654_48	UniRef90	UniRef90_A0A2N0UYY1	Phage-related protein	NA
UHGV-0059654_48	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0059654_48	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0059654_48	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0059654_49	PHROG	phrog_1194	NA	unknown function
UHGV-0059654_49	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0059654_49	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-0059654_49	Pfam	PF20458	NA	DUF6711
UHGV-0059654_49	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0059654_50	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0059654_51	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0059654_51	Structural annotation	PF08931	NA	NA
UHGV-0059654_53	PHROG	phrog_199	holin	lysis
UHGV-0059654_53	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-0059654_53	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0059654_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0059654_53	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0059654_53	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0059654_53	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0059654_54	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0059654_54	PHROG	phrog_20388	endolysin	lysis
UHGV-0059654_54	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0059654_54	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0059654_54	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0059654_54	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0059654_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0059654_54	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0059654_55	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0059654_55	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0059654_55	UniRef90	UniRef90_A0A412UM21	Methyltransferase	NA
UHGV-0059654_55	eggNOG-mapper	1226322.HMPREF1545_02860	NA	NA
UHGV-0059654_55	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0059654_55	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0059654_55	COG	COG0863	DNA modification methylase	NA
UHGV-0059654_56	UniRef90	UniRef90_UPI001B3C704F	helix-turn-helix domain-containing protein	NA
UHGV-0059654_56	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA