UHGV-0059695

Genome information

Genome length 30,927 bps

CDS count 46

Completeness 66.79% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0059695
vOTU ID	vOTU-017015
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_101997
BioSample	SAMEA2466946
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.55
Jumbo phage	No

Genome content
Genome length	30,927 bps
GC content	32.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.54%
Average CDS length	640.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0059695_1	eggNOG-mapper	1227268.HMPREF1552_00029	NA	NA
UHGV-0059695_2	PHROG	phrog_1281	NA	unknown function
UHGV-0059695_2	UniRef90	UniRef90_A0A2T3G2D7	NA	NA
UHGV-0059695_2	eggNOG-mapper	679192.HMPREF9013_1310	NA	NA
UHGV-0059695_2	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0059695_2	COG	COG3600	NA	NA
UHGV-0059695_2	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0059695_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0059695_3	PHROG	phrog_670	endolysin	lysis
UHGV-0059695_3	UniRef90	UniRef90_UPI001D091812	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0059695_3	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0059695_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0059695_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0059695_3	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0059695_3	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0059695_4	PHROG	phrog_872	NA	unknown function
UHGV-0059695_4	UniRef90	UniRef90_UPI00156D9C17	Gp49 family protein	NA
UHGV-0059695_4	eggNOG-mapper	1123288.SOV_4c02650	NA	NA
UHGV-0059695_4	dbAPIS	APIS052	NA	NA
UHGV-0059695_5	PHROG	phrog_4105	NA	unknown function
UHGV-0059695_5	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0059695_6	PHROG	phrog_1129	holin	lysis
UHGV-0059695_6	UniRef90	UniRef90_A0A0J8Z1S7	Holin protein	NA
UHGV-0059695_6	eggNOG-mapper	411490.ANACAC_00598	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0059695_6	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0059695_6	Structural annotation	PF06946	NA	NA
UHGV-0059695_7	PHROG	phrog_1401	NA	unknown function
UHGV-0059695_7	UniRef90	UniRef90_UPI001CC36A2F	NA	NA
UHGV-0059695_7	eggNOG-mapper	1391647.AVSV01000003_gene1820	NA	NA
UHGV-0059695_7	Structural annotation	PF07761	NA	NA
UHGV-0059695_8	PHROG	phrog_2566	NA	unknown function
UHGV-0059695_8	eggNOG-mapper	1449342.JQMR01000001_gene983	NA	NA
UHGV-0059695_9	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0059695_9	PHROG	phrog_9478	minor tail protein	tail
UHGV-0059695_9	UniRef90	UniRef90_UPI0018A89D02	phage tail protein	NA
UHGV-0059695_9	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-0059695_9	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0059695_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0059695_9	Structural annotation	PF14594, PF00529, TIGR01665, TIGR02971, COG4926	NA	NA
UHGV-0059695_10	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0059695_10	UniRef90	UniRef90_UPI001D093A04	phage tail family protein	NA
UHGV-0059695_10	eggNOG-mapper	476272.RUMHYD_02864	NA	NA
UHGV-0059695_10	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0059695_10	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0059695_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0059695_10	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0059695_11	PHROG	phrog_1204	tail protein	tail
UHGV-0059695_11	UniRef90	UniRef90_A0A1C6FQH8	Phage-related protein	NA
UHGV-0059695_11	eggNOG-mapper	1235798.C817_03468	nuclear chromosome segregation	NA
UHGV-0059695_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0059695_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0059695_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0059695_11	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0059695_12	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0059695_13	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0059695_13	UniRef90	UniRef90_A0A315ZUX3	Phage tail assembly chaperone protein, TAC	NA
UHGV-0059695_13	eggNOG-mapper	1158610.UC3_03187	Phage tail assembly chaperone protein, TAC	NA
UHGV-0059695_13	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0059695_13	Structural annotation	PF12363	NA	NA
UHGV-0059695_14	PHROG	phrog_238	major tail protein	tail
UHGV-0059695_14	UniRef90	UniRef90_A0A2T3G2T7	Phage major tail protein, TP901-1 family	NA
UHGV-0059695_14	eggNOG-mapper	476272.RUMHYD_02860	Phage tail tube protein	NA
UHGV-0059695_14	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0059695_14	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0059695_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0059695_15	PHROG	phrog_176	tail terminator	connector
UHGV-0059695_15	UniRef90	UniRef90_A0A416FZL1	NA	NA
UHGV-0059695_15	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0059695_15	Structural annotation	PF11367	NA	NA
UHGV-0059695_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0059695_16	UniRef90	UniRef90_UPI0019D0375C	HK97 gp10 family phage protein	NA
UHGV-0059695_16	eggNOG-mapper	1462527.CCDM010000010_gene529	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0059695_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0059695_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0059695_16	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0059695_17	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0059695_17	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0059695_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0059695_18	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0059695_18	UniRef90	UniRef90_UPI001961CD9D	phage head-tail connector protein	NA
UHGV-0059695_18	eggNOG-mapper	1235796.C815_00917	Phage gp6-like head-tail connector protein	NA
UHGV-0059695_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0059695_18	Structural annotation	PF05135	NA	NA
UHGV-0059695_19	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0059695_19	UniRef90	UniRef90_UPI0018F16521	Rho termination protein	NA
UHGV-0059695_19	eggNOG-mapper	491915.Aflv_0665	NA	NA
UHGV-0059695_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-0059695_20	eggNOG-mapper	476272.RUMHYD_02854	NA	NA
UHGV-0059695_20	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0059695_21	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0059695_21	UniRef90	UniRef90_UPI001D064961	NA	NA
UHGV-0059695_21	eggNOG-mapper	476272.RUMHYD_02853	NA	NA
UHGV-0059695_21	Pfam	PF14265	NA	DUF4355
UHGV-0059695_21	Structural annotation	PF14265	NA	NA
UHGV-0059695_22	KOfam	K07584	NA	NA
UHGV-0059695_22	PHROG	phrog_4478	peptidase	other
UHGV-0059695_22	UniRef90	UniRef90_A0A1C6FNU8	Predicted ribosomal protein	NA
UHGV-0059695_22	eggNOG-mapper	555088.DealDRAFT_1009	Pfam:Peptidase_C108	NA
UHGV-0059695_22	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0059695_22	COG	COG2868	NA	NA
UHGV-0059695_22	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0059695_23	PHROG	phrog_30609	NA	unknown function
UHGV-0059695_23	Structural annotation	PF21485	NA	NA
UHGV-0059695_24	PHROG	phrog_1233	NA	unknown function
UHGV-0059695_24	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0059695_24	Structural annotation	PF13058	NA	NA
UHGV-0059695_26	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0059695_26	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0059695_26	UniRef90	UniRef90_A0A1C6FP41	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0059695_26	eggNOG-mapper	1232453.BAIF02000011_gene3354	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0059695_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0059695_26	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0059695_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0059695_26	COG	COG2369	NA	NA
UHGV-0059695_26	Structural annotation	PF04233, PF18825, TIGR01641, COG2369	NA	NA
UHGV-0059695_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0059695_27	UniRef90	UniRef90_A0A416FZX0	Phage portal protein	NA
UHGV-0059695_27	eggNOG-mapper	476272.RUMHYD_02846	Phage portal protein, SPP1 family	NA
UHGV-0059695_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0059695_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0059695_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0059695_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0059695_28	PHROG	phrog_10250	NA	unknown function
UHGV-0059695_28	UniRef90	UniRef90_A0A416FZH9	PBSX family phage terminase large subunit	NA
UHGV-0059695_28	eggNOG-mapper	1121105.ATXL01000006_gene1371	Terminase-like family	NA
UHGV-0059695_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0059695_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0059695_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0059695_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0059695_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0059695_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0059695_29	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0059695_29	UniRef90	UniRef90_UPI0018A9B124	terminase small subunit	NA
UHGV-0059695_29	eggNOG-mapper	1511.CLOST_1532	terminase, small subunit	NA
UHGV-0059695_29	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0059695_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0059695_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0059695_29	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0059695_30	UniRef90	UniRef90_D7GQ90	Rab geranylgeranyl transferase alpha-subunit, insert domain	NA
UHGV-0059695_30	eggNOG-mapper	622312.ROSEINA2194_00320	NA	NA
UHGV-0059695_31	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0059695_31	PHROG	phrog_14430	NA	unknown function
UHGV-0059695_31	UniRef90	UniRef90_UPI001D0A1198	ATP-binding protein	NA
UHGV-0059695_31	eggNOG-mapper	1227268.HMPREF1552_01028	NA	NA
UHGV-0059695_31	PADLOC	AAA_15	NA	NA
UHGV-0059695_31	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0059695_31	COG	COG3950	Predicted ATP-binding protein involved in virulence	NA
UHGV-0059695_31	Structural annotation	PF11398, MF_00365, NF041760, COG4938	NA	NA
UHGV-0059695_32	UniRef90	UniRef90_A0A2T3G2L3	Ferritin-like diiron domain-containing protein	NA
UHGV-0059695_32	eggNOG-mapper	1211844.CBLM010000023_gene991	NA	NA
UHGV-0059695_35	PHROG	phrog_12650	NA	unknown function
UHGV-0059695_35	Structural annotation	NF010673	NA	NA
UHGV-0059695_38	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0059695_38	UniRef90	UniRef90_A0A416FW19	Class I SAM-dependent methyltransferase	NA
UHGV-0059695_38	eggNOG-mapper	1145276.T479_16310	methyltransferase	NA
UHGV-0059695_38	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0059695_38	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0059695_38	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0059695_38	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0059695_39	PHROG	phrog_31107	NA	unknown function
UHGV-0059695_40	PHROG	phrog_13561	NA	unknown function
UHGV-0059695_41	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0059695_41	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0059695_42	Structural annotation	PF01283, NF006816, COG4830	NA	NA
UHGV-0059695_44	PHROG	phrog_8470	NA	unknown function
UHGV-0059695_44	UniRef90	UniRef90_UPI00047FE04A	PcfJ domain-containing protein	NA
UHGV-0059695_44	eggNOG-mapper	1211844.CBLM010000016_gene1507	PcfJ-like protein	NA
UHGV-0059695_44	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0059695_45	eggNOG-mapper	1232446.BAIE02000011_gene1624	PcfJ-like protein	NA
UHGV-0059695_46	eggNOG-mapper	742766.HMPREF9455_01852	PcfK-like protein	NA