UHGV-0059768

Genome information

Genome length 31,068 bps

CDS count 48

Completeness 72.42% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0059768
vOTU ID	vOTU-025851
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_74437
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.45
Jumbo phage	No

Genome content
Genome length	31,068 bps
GC content	46.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.63%
Average CDS length	594.25 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0059768_1	PHROG	phrog_2329	NA	unknown function
UHGV-0059768_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0059768_4	PHROG	phrog_291	endolysin	lysis
UHGV-0059768_4	UniRef90	UniRef90_A0A1C5ZRX7	Autolytic lysozyme	NA
UHGV-0059768_4	eggNOG-mapper	658086.HMPREF0994_03328	Glycosyl hydrolases family 25	NA
UHGV-0059768_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0059768_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0059768_4	Structural annotation	PF01183, TIGR00612, COG3757	NA	NA
UHGV-0059768_5	PHROG	phrog_18593	NA	unknown function
UHGV-0059768_5	UniRef90	UniRef90_R5HAU4	Carbohydrate binding domain protein	NA
UHGV-0059768_5	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0059768_5	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0059768_5	Structural annotation	PF14600	NA	NA
UHGV-0059768_8	PHROG	phrog_18725	NA	unknown function
UHGV-0059768_8	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0059768_9	PHROG	phrog_13879	NA	unknown function
UHGV-0059768_9	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0059768_9	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0059768_10	PHROG	phrog_1194	NA	unknown function
UHGV-0059768_10	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0059768_10	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0059768_11	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0059768_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0059768_11	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0059768_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0059768_12	PHROG	phrog_706	NA	unknown function
UHGV-0059768_12	UniRef90	UniRef90_R5H1B0	Bacteriophage Gp15 protein	NA
UHGV-0059768_12	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0059768_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0059768_12	Structural annotation	PF06854	NA	NA
UHGV-0059768_13	PHROG	phrog_11299	NA	unknown function
UHGV-0059768_13	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-0059768_13	eggNOG-mapper	397290.C810_05234	NA	NA
UHGV-0059768_13	Structural annotation	PF10666	NA	NA
UHGV-0059768_14	PHROG	phrog_3099	NA	unknown function
UHGV-0059768_14	UniRef90	UniRef90_C4IFF0	S-l_SbsC_C domain-containing protein	NA
UHGV-0059768_14	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-0059768_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0059768_15	PHROG	phrog_3266	tail completion	connector
UHGV-0059768_15	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0059768_15	Structural annotation	PF12691	NA	NA
UHGV-0059768_16	PHROG	phrog_3366	NA	unknown function
UHGV-0059768_16	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0059768_16	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0059768_17	PHROG	phrog_8680	NA	unknown function
UHGV-0059768_17	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-0059768_17	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0059768_17	Pfam	PF14386	NA	DUF4417
UHGV-0059768_17	Structural annotation	PF14386	NA	NA
UHGV-0059768_18	PHROG	phrog_18218	NA	unknown function
UHGV-0059768_18	UniRef90	UniRef90_A0A3D0FFR6	Ribonuclease	NA
UHGV-0059768_18	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0059768_18	Structural annotation	PF06946	NA	NA
UHGV-0059768_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0059768_19	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0059768_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-0059768_20	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0059768_20	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0059768_20	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0059768_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0059768_21	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0059768_21	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0059768_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0059768_22	PHROG	phrog_28802	NA	unknown function
UHGV-0059768_22	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0059768_23	PHROG	phrog_20016	NA	unknown function
UHGV-0059768_23	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0059768_23	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0059768_23	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0059768_24	PHROG	phrog_16490	NA	unknown function
UHGV-0059768_24	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0059768_25	PHROG	phrog_22984	NA	unknown function
UHGV-0059768_26	PHROG	phrog_21718	NA	unknown function
UHGV-0059768_26	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0059768_27	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0059768_27	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0059768_27	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0059768_27	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0059768_28	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0059768_28	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0059768_29	PHROG	phrog_3754	NA	unknown function
UHGV-0059768_29	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0059768_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0059768_30	UniRef90	UniRef90_UPI000E4E3D5A	phage capsid protein	NA
UHGV-0059768_30	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0059768_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0059768_30	COG	COG2369	NA	NA
UHGV-0059768_30	Structural annotation	PF06152	NA	NA
UHGV-0059768_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0059768_31	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-0059768_31	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0059768_31	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0059768_31	Structural annotation	PF11114	NA	NA
UHGV-0059768_32	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0059768_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0059768_34	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0059768_34	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0059768_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0059768_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0059768_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0059768_35	UniRef90	UniRef90_R6RP56	Phage terminase large subunit pbsx family	NA
UHGV-0059768_35	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0059768_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0059768_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0059768_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0059768_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0059768_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0059768_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0059768_36	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0059768_36	UniRef90	UniRef90_A0A1I0K7H5	Phage terminase small subunit	NA
UHGV-0059768_36	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0059768_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0059768_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0059768_36	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0059768_37	PHROG	phrog_33130	NA	unknown function
UHGV-0059768_37	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0059768_37	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0059768_38	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0059768_39	eggNOG-mapper	1235790.C805_00594	NA	NA
UHGV-0059768_40	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0059768_40	UniRef90	UniRef90_UPI0011058898	NA	NA
UHGV-0059768_40	eggNOG-mapper	1458856.A0A059T699_9CAUD	NA	NA
UHGV-0059768_40	Pfam	PF12961	NA	DUF3850
UHGV-0059768_40	Structural annotation	PF12961	NA	NA
UHGV-0059768_42	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0059768_42	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0059768_42	UniRef90	UniRef90_R5GX73	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0059768_42	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0059768_42	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0059768_42	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0059768_42	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0059768_42	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0059768_42	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0059768_43	UniRef90	UniRef90_UPI001F46867E	NA	NA
UHGV-0059768_43	Pfam	PF04448	NA	DUF551
UHGV-0059768_44	UniRef90	UniRef90_A0A6H1ZPR3	PAPS_reduct domain-containing protein (Fragment)	NA
UHGV-0059768_44	eggNOG-mapper	742765.HMPREF9457_03403	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0059768_44	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0059768_45	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0059768_45	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0059768_45	UniRef90	UniRef90_A0A316M8U5	Class V aminotransferase	NA
UHGV-0059768_45	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0059768_45	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0059768_45	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0059768_45	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0059768_48	PHROG	phrog_27197	NA	unknown function
UHGV-0059768_48	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0059768_48	COG	COG5164	Transcription elongation factor SPT5	NA