UHGV-0059859

Genome information

vOTU vOTU-019596

Genome length 37,423 bps

CDS count 57

Completeness 85.35% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0059859
vOTU ID	vOTU-019596
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_78114
BioSample	SAMEA2338788
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.12
Jumbo phage	No

Genome content
Genome length	37,423 bps
GC content	45.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.91%
Average CDS length	609.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0059859_1	PHROG	phrog_38078	NA	unknown function
UHGV-0059859_1	UniRef90	UniRef90_UPI001593EBCF	CHAP domain-containing protein	NA
UHGV-0059859_1	eggNOG-mapper	742740.HMPREF9474_04289	Peptidoglycan-binding domain 1 protein	NA
UHGV-0059859_1	Pfam	PF05257	CHAP domain	CHAP
UHGV-0059859_1	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0059859_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0059859_1	Structural annotation	PF00877, PF19127, TIGR02594, TIGR04035, COG3738	NA	NA
UHGV-0059859_2	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0059859_2	UniRef90	UniRef90_UPI00195F70B6	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0059859_2	eggNOG-mapper	1235792.C808_03054	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0059859_2	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0059859_2	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0059859_2	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0059859_3	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0059859_3	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0059859_3	UniRef90	UniRef90_A0A7X2NKL3	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0059859_3	eggNOG-mapper	1235792.C808_03055	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0059859_3	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0059859_3	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0059859_3	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0059859_4	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0059859_4	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0059859_4	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0059859_4	Pfam	PF14359	NA	DUF4406
UHGV-0059859_4	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0059859_5	PHROG	phrog_199	holin	lysis
UHGV-0059859_5	UniRef90	UniRef90_UPI000830E190	phage holin family protein	NA
UHGV-0059859_5	eggNOG-mapper	1235793.C809_01935	Bacteriophage holin family	NA
UHGV-0059859_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0059859_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0059859_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0059859_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0059859_6	eggNOG-mapper	632245.CLP_1288	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0059859_6	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0059859_6	Structural annotation	PF21253, NF038128	NA	NA
UHGV-0059859_7	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0059859_8	PHROG	phrog_521	tail protein	tail
UHGV-0059859_8	UniRef90	UniRef90_A0A3R6U2T5	NA	NA
UHGV-0059859_8	eggNOG-mapper	610130.Closa_1410	NA	NA
UHGV-0059859_8	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0059859_8	COG	COG3778	NA	NA
UHGV-0059859_8	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0059859_9	PHROG	phrog_6	baseplate protein	tail
UHGV-0059859_9	UniRef90	UniRef90_A0A3E2VLM9	Baseplate J/gp47 family protein	NA
UHGV-0059859_9	eggNOG-mapper	610130.Closa_1409	Baseplate J-like protein	NA
UHGV-0059859_9	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0059859_9	COG	COG3299	NA	NA
UHGV-0059859_9	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0059859_10	PHROG	phrog_120	baseplate protein	tail
UHGV-0059859_10	UniRef90	UniRef90_A0A174IHY9	Phage-like element PBSX protein, XkdS	NA
UHGV-0059859_10	eggNOG-mapper	610130.Closa_1408	NA	NA
UHGV-0059859_10	Pfam	PF10934	NA	DUF2634
UHGV-0059859_10	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0059859_10	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0059859_11	UniRef90	UniRef90_A0A413L5A6	DNA helicase	NA
UHGV-0059859_11	eggNOG-mapper	610130.Closa_1407	NA	NA
UHGV-0059859_11	Structural annotation	PF10844, NF003076	NA	NA
UHGV-0059859_12	PHROG	phrog_400	tail protein	tail
UHGV-0059859_12	UniRef90	UniRef90_A0A174R8Z2	NA	NA
UHGV-0059859_12	eggNOG-mapper	610130.Closa_1406	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0059859_12	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0059859_12	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0059859_13	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0059859_13	PHROG	phrog_380	endolysin	lysis
UHGV-0059859_13	UniRef90	UniRef90_A0A6N3EUH8	Spore coat assembly protein ExsA	NA
UHGV-0059859_13	eggNOG-mapper	610130.Closa_1405	LysM domain	NA
UHGV-0059859_13	Pfam	PF01476	LysM domain	LysM
UHGV-0059859_13	COG	COG1388	LysM repeat	NA
UHGV-0059859_13	Structural annotation	PF21821, PF05489, TIGR02126, TIGR02899, COG3499, COG1388	NA	NA
UHGV-0059859_14	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0059859_14	UniRef90	UniRef90_A0A174RA99	Phage tape measure protein	NA
UHGV-0059859_14	eggNOG-mapper	610130.Closa_1404	tape measure	NA
UHGV-0059859_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0059859_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0059859_14	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0059859_14	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0059859_15	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0059859_15	UniRef90	UniRef90_D3AJ47	Phage XkdN-like protein	NA
UHGV-0059859_15	eggNOG-mapper	1121335.Clst_0400	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0059859_15	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0059859_15	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0059859_16	PHROG	phrog_365	tail protein	tail
UHGV-0059859_16	UniRef90	UniRef90_UPI00189F763E	phage tail tube protein	NA
UHGV-0059859_16	eggNOG-mapper	610130.Closa_1401	Phage tail tube protein	NA
UHGV-0059859_16	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0059859_16	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0059859_17	PHROG	phrog_279	tail sheath	tail
UHGV-0059859_17	UniRef90	UniRef90_A0A3E2VLN9	Phage tail sheath protein	NA
UHGV-0059859_17	eggNOG-mapper	1121335.Clst_0397	Phage tail sheath C-terminal domain	NA
UHGV-0059859_17	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0059859_17	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0059859_17	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0059859_18	PHROG	phrog_525	NA	unknown function
UHGV-0059859_18	UniRef90	UniRef90_A0A174IGV6	NA	NA
UHGV-0059859_18	eggNOG-mapper	203119.Cthe_2483	NA	NA
UHGV-0059859_18	Pfam	PF20765	NA	DUF6838
UHGV-0059859_18	Structural annotation	PF20765	NA	NA
UHGV-0059859_19	UniRef90	UniRef90_A0A174IIP2	Bacteriophage protein	NA
UHGV-0059859_19	eggNOG-mapper	610130.Closa_1398	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0059859_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0059859_19	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0059859_20	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0059859_20	eggNOG-mapper	203119.Cthe_2481	NA	NA
UHGV-0059859_20	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0059859_21	UniRef90	UniRef90_A0A1E3A379	Phage gp6-like head-tail connector protein	NA
UHGV-0059859_21	eggNOG-mapper	610130.Closa_1396	NA	NA
UHGV-0059859_21	Structural annotation	PF05135	NA	NA
UHGV-0059859_23	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0059859_23	UniRef90	UniRef90_UPI000B8B2D48	NA	NA
UHGV-0059859_23	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0059859_23	Pfam	PF17236	NA	DUF5309
UHGV-0059859_23	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0059859_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0059859_24	UniRef90	UniRef90_A0A6N3ENJ7	Phage minor structural protein GP20	NA
UHGV-0059859_24	eggNOG-mapper	203119.Cthe_2478	Phage minor structural protein GP20	NA
UHGV-0059859_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0059859_24	Structural annotation	PF06810	NA	NA
UHGV-0059859_25	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0059859_27	PHROG	phrog_16164	NA	unknown function
UHGV-0059859_27	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0059859_27	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0059859_28	PHROG	phrog_27009	NA	unknown function
UHGV-0059859_29	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0059859_29	UniRef90	UniRef90_A0A6P1MFS1	Phage head morphogenesis protein	NA
UHGV-0059859_29	eggNOG-mapper	610130.Closa_1392	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0059859_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0059859_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0059859_29	COG	COG2369	NA	NA
UHGV-0059859_29	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0059859_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0059859_30	UniRef90	UniRef90_A0A6N3EVC0	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0059859_30	eggNOG-mapper	203119.Cthe_2475	phage portal protein, SPP1	NA
UHGV-0059859_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0059859_30	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0059859_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0059859_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0059859_31	PHROG	phrog_10250	NA	unknown function
UHGV-0059859_31	UniRef90	UniRef90_A0A174R281	Phage terminase, large subunit, PBSX family	NA
UHGV-0059859_31	eggNOG-mapper	642492.Clole_2765	Phage terminase, large subunit, PBSX family	NA
UHGV-0059859_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0059859_31	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0059859_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0059859_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0059859_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0059859_32	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0059859_32	UniRef90	UniRef90_UPI00189E3050	phage terminase small subunit	NA
UHGV-0059859_32	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0059859_32	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0059859_32	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0059859_32	COG	COG5484	NA	NA
UHGV-0059859_32	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0059859_33	eggNOG-mapper	748449.Halha_2167	NA	NA
UHGV-0059859_33	Structural annotation	PF15968	NA	NA
UHGV-0059859_34	PHROG	phrog_10865	NA	unknown function
UHGV-0059859_34	eggNOG-mapper	1410650.JHWL01000041_gene2476	NA	NA
UHGV-0059859_34	Pfam	PF20505	NA	DUF6731
UHGV-0059859_34	Structural annotation	PF20505, NF001463	NA	NA
UHGV-0059859_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0059859_35	UniRef90	UniRef90_UPI001D0814CA	RNA polymerase subunit sigma-70	NA
UHGV-0059859_35	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0059859_35	Structural annotation	PF02996	NA	NA
UHGV-0059859_36	PHROG	phrog_6568	NA	unknown function
UHGV-0059859_37	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0059859_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0059859_37	UniRef90	UniRef90_UPI001BAB4319	helix-turn-helix transcriptional regulator	NA
UHGV-0059859_37	eggNOG-mapper	742740.HMPREF9474_03107	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0059859_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0059859_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0059859_37	Structural annotation	PF01381, PF13384, MF_00535, NF041951, COG1476	NA	NA
UHGV-0059859_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0059859_38	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0059859_38	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0059859_38	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0059859_38	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0059859_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0059859_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0059859_38	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0059859_41	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0059859_41	UniRef90	UniRef90_UPI00159315AB	NA	NA
UHGV-0059859_41	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0059859_41	Pfam	PF06048	NA	DUF927
UHGV-0059859_41	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0059859_41	COG	COG5519	NA	NA
UHGV-0059859_41	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0059859_42	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0059859_42	PHROG	phrog_11992	NA	unknown function
UHGV-0059859_42	UniRef90	UniRef90_UPI001594414B	CHC2 zinc finger domain-containing protein	NA
UHGV-0059859_42	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0059859_42	PADLOC	drt-UG29	DRT	DRT
UHGV-0059859_42	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0059859_42	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0059859_42	Structural annotation	PF01807	NA	NA
UHGV-0059859_43	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0059859_43	UniRef90	UniRef90_A0A3D3U9X5	ERCC4 domain-containing protein	NA
UHGV-0059859_43	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0059859_43	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0059859_43	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0059859_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0059859_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0059859_44	UniRef90	UniRef90_A0A3D3U8Y9	Single-stranded DNA-binding protein	NA
UHGV-0059859_44	eggNOG-mapper	445972.ANACOL_01827	Single-stranded DNA-binding protein	NA
UHGV-0059859_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0059859_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0059859_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0059859_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0059859_44	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0059859_45	PHROG	phrog_21613	NA	unknown function
UHGV-0059859_45	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0059859_46	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0059859_46	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0059859_46	UniRef90	UniRef90_A0A3D3U8P6	NA	NA
UHGV-0059859_46	eggNOG-mapper	1122201.AUAZ01000055_gene153	NA	NA
UHGV-0059859_46	Pfam	PF12684	NA	DUF3799
UHGV-0059859_46	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0059859_47	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0059859_48	PHROG	phrog_30234	NA	unknown function
UHGV-0059859_48	eggNOG-mapper	33035.JPJF01000135_gene5083	NA	NA
UHGV-0059859_52	Structural annotation	PF10743, TIGR01764, COG4220	NA	NA
UHGV-0059859_54	eggNOG-mapper	1235799.C818_04193	NA	NA
UHGV-0059859_55	PHROG	phrog_21028	NA	unknown function
UHGV-0059859_55	eggNOG-mapper	1235799.C818_04193	NA	NA
UHGV-0059859_57	KOfam	K00991	ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]	NA
UHGV-0059859_57	UniRef90	UniRef90_A0A1Q9J1R5	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA
UHGV-0059859_57	eggNOG-mapper	1123075.AUDP01000055_gene2821	Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP)	NA
UHGV-0059859_57	Pfam	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	IspD
UHGV-0059859_57	COG	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA