UHGV-0059873

Genome information

Genome length 63,772 bps

CDS count 71

Completeness 99.64% (high-quality)

geNomad score 0.9685

Prediction confidence Confident

Genome information
Genome ID	UHGV-0059873
vOTU ID	vOTU-075970
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_85857
BioSample	SAMEA2338844
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9685
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.24
Jumbo phage	No

Genome content
Genome length	63,772 bps
GC content	42.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	91.06%
Average CDS length	820.73 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0059873_2	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0059873_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0059873_2	UniRef90	UniRef90_UPI001921BDF0	phage integrase SAM-like domain-containing protein	NA
UHGV-0059873_2	eggNOG-mapper	457424.BFAG_02375	Belongs to the 'phage' integrase family	NA
UHGV-0059873_2	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0059873_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0059873_2	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA
UHGV-0059873_4	eggNOG-mapper	1268240.ATFI01000007_gene393	NA	NA
UHGV-0059873_5	UniRef90	UniRef90_A0A162RQF7	NA	NA
UHGV-0059873_5	eggNOG-mapper	714943.Mucpa_4920	NA	NA
UHGV-0059873_6	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-0059873_8	PHROG	phrog_14770	NA	unknown function
UHGV-0059873_8	UniRef90	UniRef90_UPI001D1880A5	LPD5 domain-containing protein	NA
UHGV-0059873_8	eggNOG-mapper	1347393.HG726020_gene1834	CRISPR-associated helicase, Cas3	NA
UHGV-0059873_8	Pfam	PF18827	Large polyvalent protein-associated domain 14	LPD14
UHGV-0059873_8	Pfam	PF18823	Inorganic Pyrophosphatase	InPase
UHGV-0059873_8	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0059873_8	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0059873_8	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0059873_8	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0059873_9	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0059873_9	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0059873_9	UniRef90	UniRef90_UPI001924D36B	NA	NA
UHGV-0059873_9	eggNOG-mapper	483216.BACEGG_00580	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0059873_9	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0059873_9	Pfam	PF11922	NA	DUF3440
UHGV-0059873_9	COG	COG3969	NA	NA
UHGV-0059873_9	Structural annotation	PF11922, PF01507, MF_00063, NF006327, COG3969	NA	NA
UHGV-0059873_11	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0059873_11	UniRef90	UniRef90_UPI0019218E4D	metallophosphoesterase	NA
UHGV-0059873_11	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0059873_12	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0059873_13	PHROG	phrog_2234	tail spike protein	tail
UHGV-0059873_13	eggNOG-mapper	449673.BACSTE_02041	Leucine-rich repeat (LRR) protein	NA
UHGV-0059873_13	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0059873_14	PHROG	phrog_22135	NA	unknown function
UHGV-0059873_14	eggNOG-mapper	1349822.NSB1T_10615	NA	NA
UHGV-0059873_14	Structural annotation	PF17212	NA	NA
UHGV-0059873_16	PHROG	phrog_26635	NA	unknown function
UHGV-0059873_16	UniRef90	UniRef90_UPI0019250C39	NA	NA
UHGV-0059873_16	eggNOG-mapper	1347393.HG726020_gene1829	NA	NA
UHGV-0059873_16	Pfam	PF17236	NA	DUF5309
UHGV-0059873_16	Structural annotation	PF17236, MF_04133, TIGR01554, COG4834	NA	NA
UHGV-0059873_17	PHROG	phrog_22323	NA	unknown function
UHGV-0059873_17	eggNOG-mapper	1347393.HG726020_gene1830	NA	NA
UHGV-0059873_18	PHROG	phrog_27246	NA	unknown function
UHGV-0059873_18	eggNOG-mapper	1347393.HG726020_gene1831	NA	NA
UHGV-0059873_19	KOfam	K19225	gluP; rhomboid protease GluP [EC:3.4.21.105]	NA
UHGV-0059873_19	UniRef90	UniRef90_UPI0002132130	rhomboid family intramembrane serine protease	NA
UHGV-0059873_19	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-0059873_19	Structural annotation	PF01694, MF_01594, TIGR04239, COG0705	NA	NA
UHGV-0059873_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0059873_20	UniRef90	UniRef90_UPI00192482D4	terminase	NA
UHGV-0059873_20	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0059873_20	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0059873_20	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0059873_22	PHROG	phrog_156	portal protein	head and packaging
UHGV-0059873_22	eggNOG-mapper	1227276.HMPREF9148_00164	NA	NA
UHGV-0059873_22	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0059873_23	PHROG	phrog_15610	protease	other
UHGV-0059873_23	eggNOG-mapper	667015.Bacsa_1191	NA	NA
UHGV-0059873_24	PHROG	phrog_38864	NA	unknown function
UHGV-0059873_24	Structural annotation	PF13185, MF_04104, NF041673, COG2203	NA	NA
UHGV-0059873_25	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0059873_25	PHROG	phrog_822	amidase	lysis
UHGV-0059873_25	UniRef90	UniRef90_UPI0019225EBC	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0059873_25	eggNOG-mapper	762984.HMPREF9445_00189	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0059873_25	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0059873_25	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0059873_25	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0059873_26	PHROG	phrog_35356	NA	unknown function
UHGV-0059873_26	UniRef90	UniRef90_UPI001924A62E	histidine kinase	NA
UHGV-0059873_26	eggNOG-mapper	411476.BACOVA_03952	NA	NA
UHGV-0059873_27	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0059873_28	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0059873_32	eggNOG-mapper	36875.HQ29_02630	NA	NA
UHGV-0059873_33	PHROG	phrog_19255	NA	unknown function
UHGV-0059873_33	eggNOG-mapper	1347393.HG726022_gene3588	NA	NA
UHGV-0059873_34	PHROG	phrog_32516	NA	unknown function
UHGV-0059873_34	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-0059873_34	Structural annotation	PF11134, COG3292	NA	NA
UHGV-0059873_38	PHROG	phrog_874	NA	unknown function
UHGV-0059873_38	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0059873_38	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0059873_39	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0059873_39	UniRef90	UniRef90_A0A357JCP2	HNHc domain-containing protein	NA
UHGV-0059873_39	eggNOG-mapper	1423814.HMPREF0549_1779	NUMOD4 motif	NA
UHGV-0059873_39	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0059873_39	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0059873_39	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0059873_39	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-0059873_41	UniRef90	UniRef90_A0A0P0G0M6	DNA_pol3_beta_3 domain-containing protein	NA
UHGV-0059873_41	Structural annotation	PF02767, TIGR00663, COG0592	NA	NA
UHGV-0059873_43	PHROG	phrog_12005	NA	unknown function
UHGV-0059873_50	UniRef90	UniRef90_UPI0004E5D5F0	NA	NA
UHGV-0059873_50	eggNOG-mapper	1347393.HG726022_gene3718	NA	NA
UHGV-0059873_50	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0059873_51	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0059873_51	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0059873_51	UniRef90	UniRef90_A0A3A5S267	Methyltransferase	NA
UHGV-0059873_51	eggNOG-mapper	411154.GFO_2469	DNA methylase	NA
UHGV-0059873_51	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0059873_51	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0059873_51	COG	COG0863	DNA modification methylase	NA
UHGV-0059873_51	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0059873_52	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0059873_52	UniRef90	UniRef90_A0A6I0HLL6	Class I SAM-dependent methyltransferase	NA
UHGV-0059873_52	eggNOG-mapper	1121100.JCM6294_542	Methyltransferase domain	NA
UHGV-0059873_52	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0059873_52	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0059873_52	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0059873_52	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0059873_54	PHROG	phrog_29547	NA	unknown function
UHGV-0059873_54	UniRef90	UniRef90_A0A6L5XC99	HTH araC/xylS-type domain-containing protein	NA
UHGV-0059873_54	eggNOG-mapper	619693.HMPREF6745_2494	NA	NA
UHGV-0059873_54	Pfam	PF20338	NA	DUF6633
UHGV-0059873_54	Structural annotation	PF20338	NA	NA
UHGV-0059873_55	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0059873_55	UniRef90	UniRef90_UPI001F00F70B	NA	NA
UHGV-0059873_55	eggNOG-mapper	1121100.JCM6294_532	DnaD domain protein	NA
UHGV-0059873_55	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0059873_55	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0059873_56	PHROG	phrog_824	NA	unknown function
UHGV-0059873_56	UniRef90	UniRef90_UPI001920FAA2	VRR-NUC domain-containing protein	NA
UHGV-0059873_56	eggNOG-mapper	411901.BACCAC_01208	NA	NA
UHGV-0059873_56	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0059873_57	PHROG	phrog_19572	NA	unknown function
UHGV-0059873_57	UniRef90	UniRef90_UPI0019242B3B	NA	NA
UHGV-0059873_57	eggNOG-mapper	1121098.HMPREF1534_01077	NA	NA
UHGV-0059873_57	Pfam	PF14902	NA	DUF4494
UHGV-0059873_57	Structural annotation	PF14902	NA	NA
UHGV-0059873_58	UniRef90	UniRef90_A0A015XIL7	Putative phage protein	NA
UHGV-0059873_58	eggNOG-mapper	1121100.JCM6294_548	NA	NA
UHGV-0059873_60	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0059873_60	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0059873_60	UniRef90	UniRef90_UPI0008DA70C8	SNF2-related protein	NA
UHGV-0059873_60	eggNOG-mapper	563031.HMPREF0666_01118	SNF2 family N-terminal domain	NA
UHGV-0059873_60	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0059873_60	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0059873_60	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0059873_60	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0059873_60	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0059873_61	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0059873_61	UniRef90	UniRef90_UPI0019210232	NA	NA
UHGV-0059873_61	eggNOG-mapper	742767.HMPREF9456_02058	NA	NA
UHGV-0059873_61	Pfam	PF07105	NA	DUF1367
UHGV-0059873_61	Structural annotation	PF07105	NA	NA
UHGV-0059873_62	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0059873_62	UniRef90	UniRef90_UPI0019209F24	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0059873_62	eggNOG-mapper	1121097.JCM15093_2720	NA	NA
UHGV-0059873_62	Structural annotation	PF06023, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0059873_63	eggNOG-mapper	563031.HMPREF0666_01116	NA	NA
UHGV-0059873_64	UniRef90	UniRef90_UPI001921A92D	recombinase RecT	NA
UHGV-0059873_64	eggNOG-mapper	563031.HMPREF0666_01115	RecT family	NA
UHGV-0059873_64	Pfam	PF03837	RecT family	RecT
UHGV-0059873_64	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0059873_64	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0059873_66	eggNOG-mapper	457424.BFAG_02385	NA	NA
UHGV-0059873_67	eggNOG-mapper	1347393.HG726021_gene411	NA	NA
UHGV-0059873_68	Structural annotation	PF08587	NA	NA
UHGV-0059873_69	UniRef90	UniRef90_UPI00189D10CC	helix-turn-helix domain-containing protein	NA
UHGV-0059873_69	eggNOG-mapper	1296415.JACC01000029_gene2657	NA	NA
UHGV-0059873_69	Structural annotation	PF01381, NF007257, COG1476	NA	NA
UHGV-0059873_70	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0059873_70	UniRef90	UniRef90_A0A1M6WRM4	Restriction endonuclease	NA
UHGV-0059873_70	Pfam	PF13156	Restriction endonuclease	Mrr_cat_2
UHGV-0059873_70	Structural annotation	PF13156, MF_00722, NF002876, COG1787	NA	NA