UHGV-0060092

Genome information

Genome length 34,536 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060092
vOTU ID	vOTU-055086
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_73762
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.02
Jumbo phage	No

Genome content
Genome length	34,536 bps
GC content	39.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	90.91%
Average CDS length	479.32 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060092_1	PHROG	phrog_4433	NA	unknown function
UHGV-0060092_1	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0060092_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0060092_2	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0060092_2	eggNOG-mapper	1280692.AUJL01000044_gene2344	NA	NA
UHGV-0060092_3	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0060092_3	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0060092_3	UniRef90	UniRef90_UPI001D08FB7D	ATP-binding protein	NA
UHGV-0060092_3	eggNOG-mapper	632292.Calhy_0368	PFAM IstB domain protein ATP-binding protein	NA
UHGV-0060092_3	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0060092_3	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0060092_3	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0060092_4	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0060092_4	UniRef90	UniRef90_UPI000C99E04B	conserved phage C-terminal domain-containing protein	NA
UHGV-0060092_4	eggNOG-mapper	319225.Plut_0817	NA	NA
UHGV-0060092_4	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0060092_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0060092_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0060092_6	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0060092_6	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0060092_6	UniRef90	UniRef90_A0A7K3ZA74	HNH endonuclease	NA
UHGV-0060092_6	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0060092_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0060092_10	PHROG	phrog_4973	NA	unknown function
UHGV-0060092_10	UniRef90	UniRef90_H1XTF8	Helix-turn-helix domain-containing protein	NA
UHGV-0060092_10	eggNOG-mapper	880073.Calab_0752	Helix-turn-helix domain	NA
UHGV-0060092_10	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0060092_12	eggNOG-mapper	469596.HMPREF9488_03215	NA	NA
UHGV-0060092_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0060092_15	UniRef90	UniRef90_UPI001EDEFE90	helix-turn-helix domain-containing protein	NA
UHGV-0060092_15	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0060092_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060092_15	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0060092_16	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0060092_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0060092_16	UniRef90	UniRef90_A0A1C5T7G0	Transcriptional repressor DicA	NA
UHGV-0060092_16	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0060092_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060092_16	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0060092_16	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA
UHGV-0060092_17	PHROG	phrog_87	metallo-protease	other
UHGV-0060092_17	UniRef90	UniRef90_A0A1C5T7C0	Metallopeptidase immA	NA
UHGV-0060092_17	eggNOG-mapper	997296.PB1_16494	IrrE N-terminal-like domain	NA
UHGV-0060092_17	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0060092_17	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0060092_17	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0060092_19	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0060092_19	PHROG	phrog_95	integrase	integration and excision
UHGV-0060092_19	UniRef90	UniRef90_UPI001C11D960	recombinase family protein	NA
UHGV-0060092_19	eggNOG-mapper	525254.HMPREF0072_1329	Resolvase, N terminal domain	NA
UHGV-0060092_19	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0060092_19	Pfam	PF07508	Recombinase	Recombinase
UHGV-0060092_19	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0060092_19	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0060092_19	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0060092_22	UniRef90	UniRef90_A0A412ULX9	XRE family transcriptional regulator	NA
UHGV-0060092_22	eggNOG-mapper	1410631.JHWZ01000002_gene1263	sequence-specific DNA binding	NA
UHGV-0060092_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060092_22	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0060092_22	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0060092_23	UniRef90	UniRef90_A0A6N9QEZ3	CTP synthase	NA
UHGV-0060092_23	eggNOG-mapper	411490.ANACAC_00599	NA	NA
UHGV-0060092_24	PHROG	phrog_21825	endolysin	lysis
UHGV-0060092_24	UniRef90	UniRef90_UPI0012ABDE93	CHAP domain-containing protein	NA
UHGV-0060092_24	eggNOG-mapper	702459.BBPR_0931	NLP P60 protein	NA
UHGV-0060092_24	Pfam	PF05257	CHAP domain	CHAP
UHGV-0060092_24	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0060092_26	PHROG	phrog_4105	NA	unknown function
UHGV-0060092_26	eggNOG-mapper	718252.FP2_06480	NA	NA
UHGV-0060092_27	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0060092_27	PHROG	phrog_894	endolysin	lysis
UHGV-0060092_27	UniRef90	UniRef90_UPI00165581B2	peptidoglycan-binding protein	NA
UHGV-0060092_27	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0060092_27	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0060092_27	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0060092_27	COG	COG3108	NA	NA
UHGV-0060092_27	Structural annotation	PF08291, PF01471, COG3108, COG3409	NA	NA
UHGV-0060092_28	PHROG	phrog_263	holin	lysis
UHGV-0060092_28	UniRef90	UniRef90_A0A1C5RKF0	Holin, SPP1 family	NA
UHGV-0060092_28	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-0060092_28	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0060092_28	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0060092_30	eggNOG-mapper	552398.HMPREF0866_01159	NA	NA
UHGV-0060092_31	Structural annotation	PF11192	NA	NA
UHGV-0060092_32	PHROG	phrog_9994	NA	unknown function
UHGV-0060092_32	eggNOG-mapper	742723.HMPREF9477_00894	NA	NA
UHGV-0060092_32	Structural annotation	PF20747	NA	NA
UHGV-0060092_33	PHROG	phrog_538	minor tail protein	tail
UHGV-0060092_33	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0060092_33	eggNOG-mapper	742765.HMPREF9457_03374	NA	NA
UHGV-0060092_33	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0060092_33	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0060092_34	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-0060092_34	eggNOG-mapper	665950.HMPREF1025_02521	NA	NA
UHGV-0060092_34	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0060092_35	KOfam	K10866	RAD50; DNA repair protein RAD50 [EC:3.6.-.-]	NA
UHGV-0060092_35	PHROG	phrog_23464	NA	unknown function
UHGV-0060092_35	eggNOG-mapper	1211814.CAPG01000074_gene3445	Phage tail tape measure protein TP901	NA
UHGV-0060092_35	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0060092_35	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0060092_36	PHROG	phrog_709	NA	unknown function
UHGV-0060092_36	eggNOG-mapper	1123263.AUKY01000027_gene839	NA	NA
UHGV-0060092_36	Structural annotation	PF11836	NA	NA
UHGV-0060092_37	PHROG	phrog_88	major tail protein	tail
UHGV-0060092_37	UniRef90	UniRef90_A0A8E3N1Q1	Phage tail protein	NA
UHGV-0060092_37	eggNOG-mapper	397288.C806_01515	phage major tail protein, phi13 family	NA
UHGV-0060092_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0060092_38	PHROG	phrog_78	tail terminator	connector
UHGV-0060092_38	eggNOG-mapper	1304866.K413DRAFT_1230	NA	NA
UHGV-0060092_38	Structural annotation	PF20765	NA	NA
UHGV-0060092_39	UniRef90	UniRef90_A0A8E3N0V9	HK97 gp10 family phage protein	NA
UHGV-0060092_39	eggNOG-mapper	1304866.K413DRAFT_1229	NA	NA
UHGV-0060092_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0060092_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0060092_40	PHROG	phrog_25	head closure Hc1	connector
UHGV-0060092_40	UniRef90	UniRef90_A0A8E3SHE5	Head-tail adaptor protein	NA
UHGV-0060092_40	eggNOG-mapper	1304866.K413DRAFT_1228	head-tail adaptor	NA
UHGV-0060092_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0060092_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0060092_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0060092_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0060092_41	UniRef90	UniRef90_A0A8E3SI43	Phage gp6-like head-tail connector protein	NA
UHGV-0060092_41	eggNOG-mapper	1304866.K413DRAFT_1227	Phage gp6-like head-tail connector protein	NA
UHGV-0060092_41	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0060092_43	UniRef90	UniRef90_UPI00195D52EA	head fiber protein	NA
UHGV-0060092_43	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0060092_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-0060092_44	UniRef90	UniRef90_A0A8E3SKR7	Phage major capsid protein	NA
UHGV-0060092_44	eggNOG-mapper	1399942.U3PDR8_9CAUD	peptidase activity	NA
UHGV-0060092_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0060092_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0060092_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0060092_45	KOfam	K06904	NA	NA
UHGV-0060092_45	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0060092_45	UniRef90	UniRef90_A0A8E3SN28	HK97 family phage prohead protease	NA
UHGV-0060092_45	eggNOG-mapper	397288.C806_00074	Phage prohead protease, HK97 family	NA
UHGV-0060092_45	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0060092_45	COG	COG3740	Phage head maturation protease	NA
UHGV-0060092_45	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0060092_46	PHROG	phrog_12	portal protein	head and packaging
UHGV-0060092_46	UniRef90	UniRef90_A0A8E3N3P1	Phage portal protein	NA
UHGV-0060092_46	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0060092_46	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0060092_46	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0060092_46	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0060092_47	eggNOG-mapper	428125.CLOLEP_01385	NA	NA
UHGV-0060092_48	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0060092_48	UniRef90	UniRef90_UPI0016513052	HicB family protein	NA
UHGV-0060092_48	eggNOG-mapper	476272.RUMHYD_02843	NA	NA
UHGV-0060092_48	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0060092_48	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0060092_48	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0060092_49	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0060092_49	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0060092_49	UniRef90	UniRef90_A0A316Q1B9	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-0060092_49	eggNOG-mapper	97138.C820_00754	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0060092_49	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0060092_49	Structural annotation	PF07927	NA	NA
UHGV-0060092_50	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0060092_50	UniRef90	UniRef90_UPI0019155BDB	terminase large subunit	NA
UHGV-0060092_50	eggNOG-mapper	1304866.K413DRAFT_1222	Terminase	NA
UHGV-0060092_50	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0060092_50	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0060092_50	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0060092_50	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0060092_51	UniRef90	UniRef90_UPI00191641C6	P27 family phage terminase small subunit	NA
UHGV-0060092_51	eggNOG-mapper	1304866.K413DRAFT_1221	phage terminase small subunit	NA
UHGV-0060092_51	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0060092_53	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0060092_53	UniRef90	UniRef90_A0A2V2DAV5	HNH endonuclease	NA
UHGV-0060092_53	eggNOG-mapper	397288.C806_00078	HNH nucleases	NA
UHGV-0060092_57	PHROG	phrog_5999	DNA methyltransferase	other
UHGV-0060092_57	UniRef90	UniRef90_UPI00191B8A1E	DNA cytosine methyltransferase	NA
UHGV-0060092_57	eggNOG-mapper	1196322.A370_02942	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0060092_57	PADLOC	MTase_II_00072	Type II methyltransferase	RM
UHGV-0060092_57	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0060092_57	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0060092_60	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0060092_60	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0060092_60	UniRef90	UniRef90_A0A316Q453	Single-stranded DNA-binding protein	NA
UHGV-0060092_60	eggNOG-mapper	1120998.AUFC01000019_gene325	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0060092_60	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0060092_60	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0060092_60	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0060092_60	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0060092_60	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0060092_62	PHROG	phrog_474	phosphofructokinase	other
UHGV-0060092_62	UniRef90	UniRef90_A0A316NLA2	NA	NA
UHGV-0060092_62	eggNOG-mapper	665956.HMPREF1032_00639	NA	NA
UHGV-0060092_62	Pfam	PF19905	NA	DUF6378
UHGV-0060092_62	Structural annotation	PF19905	NA	NA
UHGV-0060092_63	eggNOG-mapper	696281.Desru_1782	PFAM Peptidase S24 S26A S26B, conserved region	NA
UHGV-0060092_63	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0060092_63	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0060092_65	PHROG	phrog_25385	NA	unknown function
UHGV-0060092_65	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-0060092_66	PHROG	phrog_27197	NA	unknown function
UHGV-0060092_66	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0060092_66	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0060092_66	Structural annotation	NF007410	NA	NA