UHGV-0060101

Genome information

vOTU vOTU-032027

Genome length 23,448 bps

CDS count 30

Completeness 56.31% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060101
vOTU ID	vOTU-032027
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_99419
BioSample	SAMEA2466976
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.98
Jumbo phage	No

Genome content
Genome length	23,448 bps
GC content	45.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	97.99%
Average CDS length	772.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060101_2	eggNOG-mapper	1123511.KB905868_gene158	NA	NA
UHGV-0060101_2	Structural annotation	PF21277	NA	NA
UHGV-0060101_3	eggNOG-mapper	936573.HMPREF1147_1352	NA	NA
UHGV-0060101_4	UniRef90	UniRef90_A0A6L6TSJ6	Peptidase	NA
UHGV-0060101_4	eggNOG-mapper	484770.UFO1_1718	NA	NA
UHGV-0060101_5	Structural annotation	PF00677	NA	NA
UHGV-0060101_7	PHROG	phrog_33356	NA	unknown function
UHGV-0060101_7	eggNOG-mapper	1232428.CAVO010000021_gene791	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0060101_7	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0060101_9	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0060101_9	UniRef90	UniRef90_F5KZP0	Fibronectin type III domain protein	NA
UHGV-0060101_9	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-0060101_9	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0060101_9	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0060101_9	COG	COG1511	NA	NA
UHGV-0060101_9	Structural annotation	PF13550, PF00041, PF09294, PF17936, PF14109, NF040662, NF041335, COG4733	NA	NA
UHGV-0060101_10	PHROG	phrog_329	minor tail protein	tail
UHGV-0060101_10	UniRef90	UniRef90_A0A380N793	NlpC/P60 family	NA
UHGV-0060101_10	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0060101_10	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0060101_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0060101_10	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0060101_11	PHROG	phrog_18	minor tail protein	tail
UHGV-0060101_11	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0060101_11	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0060101_11	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0060101_11	COG	COG4672	Phage tail protein	NA
UHGV-0060101_11	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0060101_12	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-0060101_12	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0060101_13	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0060101_13	UniRef90	UniRef90_UPI000422D822	tape measure protein	NA
UHGV-0060101_13	eggNOG-mapper	1123489.AUAN01000010_gene351	tape measure	NA
UHGV-0060101_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0060101_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0060101_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0060101_14	PHROG	phrog_680	tail length tape measure protein	tail
UHGV-0060101_14	UniRef90	UniRef90_UPI001D09F5D4	NA	NA
UHGV-0060101_14	eggNOG-mapper	888060.HMPREF9081_1541	NA	NA
UHGV-0060101_14	Pfam	PF08809	NA	DUF1799
UHGV-0060101_15	eggNOG-mapper	888060.HMPREF9081_1542	NA	NA
UHGV-0060101_16	PHROG	phrog_290	minor tail protein	tail
UHGV-0060101_16	UniRef90	UniRef90_UPI00195F5747	phage tail tube protein	NA
UHGV-0060101_16	eggNOG-mapper	888060.HMPREF9081_1545	NA	NA
UHGV-0060101_16	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0060101_16	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0060101_17	PHROG	phrog_18864	NA	unknown function
UHGV-0060101_17	eggNOG-mapper	706434.HMPREF9429_00521	NA	NA
UHGV-0060101_17	Structural annotation	PF06141, COG5003	NA	NA
UHGV-0060101_18	PHROG	phrog_19017	NA	unknown function
UHGV-0060101_18	eggNOG-mapper	1123489.AUAN01000010_gene356	NA	NA
UHGV-0060101_19	UniRef90	UniRef90_A0A7R6VQ40	Phage tail protein	NA
UHGV-0060101_19	eggNOG-mapper	387092.NIS_0469	Phage virion morphogenesis	NA
UHGV-0060101_19	COG	COG5005	NA	NA
UHGV-0060101_19	Structural annotation	TIGR01725	NA	NA
UHGV-0060101_20	PHROG	phrog_15682	NA	unknown function
UHGV-0060101_20	UniRef90	UniRef90_A0A7C6KAU2	Rho_N domain-containing protein	NA
UHGV-0060101_20	eggNOG-mapper	1294142.CINTURNW_1030	NA	NA
UHGV-0060101_21	PHROG	phrog_212	major head protein	head and packaging
UHGV-0060101_21	UniRef90	UniRef90_A0A7Z0TEG2	Phage capsid protein	NA
UHGV-0060101_21	eggNOG-mapper	1321779.HMPREF1984_01306	NA	NA
UHGV-0060101_21	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0060101_22	UniRef90	UniRef90_A0A6N3AJF1	Chromosome partition protein Smc	NA
UHGV-0060101_22	eggNOG-mapper	888060.HMPREF9081_1551	NA	NA
UHGV-0060101_22	Structural annotation	PF06810	NA	NA
UHGV-0060101_24	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0060101_24	UniRef90	UniRef90_R7PPR8	Ntox50 domain-containing protein	NA
UHGV-0060101_24	eggNOG-mapper	1123489.AUAN01000010_gene362	NA	NA
UHGV-0060101_24	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0060101_25	PHROG	phrog_145	portal protein	head and packaging
UHGV-0060101_25	UniRef90	UniRef90_R6B9Z5	Conserved domain protein	NA
UHGV-0060101_25	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-0060101_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0060101_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0060101_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0060101_26	UniRef90	UniRef90_A0A316LP82	PBSX family phage terminase large subunit	NA
UHGV-0060101_26	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0060101_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0060101_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0060101_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0060101_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0060101_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0060101_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0060101_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0060101_27	UniRef90	UniRef90_A0A6N3A8E7	Terminase small subunit	NA
UHGV-0060101_27	eggNOG-mapper	883156.HMPREF9282_00945	terminase, small subunit	NA
UHGV-0060101_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0060101_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0060101_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0060101_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0060101_28	UniRef90	UniRef90_UPI001CD33068	NA	NA
UHGV-0060101_28	eggNOG-mapper	592028.GCWU000321_01368	NA	NA
UHGV-0060101_28	Pfam	PF07374	NA	DUF1492
UHGV-0060101_28	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0060101_29	PHROG	phrog_236	nucleotide kinase	other
UHGV-0060101_29	UniRef90	UniRef90_A0A6L6TNP4	NA	NA
UHGV-0060101_29	eggNOG-mapper	1003200.AXXA_28145	NA	NA
UHGV-0060101_29	Pfam	PF11753	NA	DUF3310
UHGV-0060101_30	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0060101_30	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0060101_30	UniRef90	UniRef90_A0A6L6TN95	DEAD/DEAH box helicase	NA
UHGV-0060101_30	eggNOG-mapper	883156.HMPREF9282_00941	SNF2 family	NA
UHGV-0060101_30	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0060101_30	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0060101_30	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0060101_30	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0060101_30	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA