UHGV-0060106

Genome information

Genome length 28,702 bps

CDS count 46

Completeness 78.69% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060106
vOTU ID	vOTU-032426
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_99441
BioSample	SAMEA2467006
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.47
Jumbo phage	No

Genome content
Genome length	28,702 bps
GC content	45.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.55%
Average CDS length	567.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060106_1	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0060106_2	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0060106_2	UniRef90	UniRef90_A0A3D3U9X5	ERCC4 domain-containing protein	NA
UHGV-0060106_2	eggNOG-mapper	861454.HMPREF9099_00350	ERCC4 domain	NA
UHGV-0060106_3	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0060106_3	UniRef90	UniRef90_A0A374BFJ7	DNA cytosine methyltransferase	NA
UHGV-0060106_3	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0060106_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0060106_3	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0060106_4	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0060106_4	UniRef90	UniRef90_UPI001EE8E2AA	recombinase RecT	NA
UHGV-0060106_4	eggNOG-mapper	861454.HMPREF9099_00346	NA	NA
UHGV-0060106_4	Pfam	PF03837	RecT family	RecT
UHGV-0060106_4	Structural annotation	PF03837, TIGR01913	NA	NA
UHGV-0060106_5	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0060106_5	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0060106_5	UniRef90	UniRef90_A0A1C6GFL6	Exodeoxyribonuclease 8	NA
UHGV-0060106_5	eggNOG-mapper	641147.HMPREF9021_02702	NA	NA
UHGV-0060106_5	Pfam	PF12684	NA	DUF3799
UHGV-0060106_5	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0060106_5	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0060106_10	UniRef90	UniRef90_A0A1I0E0Q2	DNA binding domain-containing protein, excisionase family	NA
UHGV-0060106_10	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0060106_10	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0060106_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0060106_11	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0060106_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0060106_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0060106_12	UniRef90	UniRef90_A0A374HKJ0	XRE family transcriptional regulator	NA
UHGV-0060106_12	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-0060106_12	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0060106_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0060106_12	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0060106_13	PHROG	phrog_7854	endolysin	lysis
UHGV-0060106_13	eggNOG-mapper	169963.lmo0617	NA	NA
UHGV-0060106_13	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0060106_13	Pfam	PF16729	NA	DUF5067
UHGV-0060106_14	KOfam	K14059	int; integrase	NA
UHGV-0060106_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0060106_14	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-0060106_14	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0060106_14	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0060106_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0060106_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0060106_14	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0060106_15	Structural annotation	PF12510	NA	NA
UHGV-0060106_16	PHROG	phrog_20016	NA	unknown function
UHGV-0060106_16	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0060106_16	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-0060106_16	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0060106_17	PHROG	phrog_16490	NA	unknown function
UHGV-0060106_17	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0060106_17	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0060106_18	PHROG	phrog_22984	NA	unknown function
UHGV-0060106_19	PHROG	phrog_21718	NA	unknown function
UHGV-0060106_19	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0060106_20	PHROG	phrog_3754	NA	unknown function
UHGV-0060106_20	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0060106_21	eggNOG-mapper	158787.BSCA_1576	Helix-turn-helix XRE-family like proteins	NA
UHGV-0060106_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060106_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0060106_26	PHROG	phrog_1863	NA	unknown function
UHGV-0060106_26	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0060106_26	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0060106_27	eggNOG-mapper	642492.Clole_0840	NA	NA
UHGV-0060106_28	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0060106_28	PHROG	phrog_9611	endolysin	lysis
UHGV-0060106_28	UniRef90	UniRef90_A0A374VU40	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0060106_28	eggNOG-mapper	411473.RUMCAL_00096	Ami_2	NA
UHGV-0060106_28	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0060106_28	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0060106_28	Structural annotation	PF01510, PF19087, MF_04111, NF008758, NF041850, COG5632	NA	NA
UHGV-0060106_29	PHROG	phrog_20274	NA	unknown function
UHGV-0060106_29	UniRef90	UniRef90_A0A174NPD4	Membrane protein	NA
UHGV-0060106_29	eggNOG-mapper	1298920.KI911353_gene4880	NA	NA
UHGV-0060106_29	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0060106_29	COG	COG4905	NA	NA
UHGV-0060106_29	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0060106_30	UniRef90	UniRef90_A0A1Y4RWY1	NA	NA
UHGV-0060106_30	eggNOG-mapper	693746.OBV_22700	NA	NA
UHGV-0060106_30	Structural annotation	PF14301	NA	NA
UHGV-0060106_32	PHROG	phrog_1220	head protein	head and packaging
UHGV-0060106_32	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-0060106_32	Structural annotation	PF20747	NA	NA
UHGV-0060106_33	PHROG	phrog_538	minor tail protein	tail
UHGV-0060106_33	eggNOG-mapper	1410670.JHXF01000015_gene2304	NA	NA
UHGV-0060106_33	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0060106_33	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0060106_34	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0060106_34	UniRef90	UniRef90_D9SQ05	Tail component family protein	NA
UHGV-0060106_34	eggNOG-mapper	573061.Clocel_2428	Phage tail protein	NA
UHGV-0060106_34	COG	COG4722	Phage-related protein YomH	NA
UHGV-0060106_34	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0060106_35	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0060106_35	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0060106_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0060106_37	PHROG	phrog_885	major tail protein	tail
UHGV-0060106_37	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0060106_37	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0060106_37	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0060106_38	Structural annotation	PF11367	NA	NA
UHGV-0060106_39	PHROG	phrog_17977	NA	unknown function
UHGV-0060106_39	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0060106_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0060106_39	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0060106_41	PHROG	phrog_544	major head protein	head and packaging
UHGV-0060106_41	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0060106_41	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0060106_41	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0060106_42	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0060106_42	Structural annotation	PF06810	NA	NA
UHGV-0060106_43	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0060106_43	UniRef90	UniRef90_Q4ZBR0	ORF019	NA
UHGV-0060106_43	eggNOG-mapper	673376.F2VHW3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0060106_44	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0060106_44	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0060106_45	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0060106_45	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0060106_45	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0060106_45	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0060106_45	COG	COG2369	NA	NA
UHGV-0060106_45	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0060106_46	PHROG	phrog_64	portal protein	head and packaging
UHGV-0060106_46	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0060106_46	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0060106_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0060106_46	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA