UHGV-0060191

Genome information

Genome length 37,923 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9561

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060191
vOTU ID	vOTU-045036
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_89182
BioSample	SAMEA2467066
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9561
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.04
Jumbo phage	No

Genome content
Genome length	37,923 bps
GC content	36.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.90%
Average CDS length	610.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060191_1	eggNOG-mapper	556268.OFAG_00371	Phage tail-collar fibre protein	NA
UHGV-0060191_1	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0060191_2	PHROG	phrog_10	major head protein	head and packaging
UHGV-0060191_2	UniRef90	UniRef90_R6PBS6	Putative phage capsid family	NA
UHGV-0060191_2	eggNOG-mapper	1321782.HMPREF1986_02268	Phage capsid family	NA
UHGV-0060191_2	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0060191_2	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0060191_2	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0060191_2	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0060191_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-0060191_5	UniRef90	UniRef90_R6PDX7	Phage Portal protein	NA
UHGV-0060191_5	eggNOG-mapper	1173745.A0A059TAE0_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0060191_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0060191_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0060191_6	eggNOG-mapper	1125863.JAFN01000001_gene3562	Phage-related protein, tail	NA
UHGV-0060191_6	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0060191_7	UniRef90	UniRef90_R6PBS2	NlpC/P60 domain-containing protein	NA
UHGV-0060191_7	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0060191_8	Pfam	PF08875	NA	DUF1833
UHGV-0060191_10	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-0060191_10	UniRef90	UniRef90_R6PDX4	Putative viral A-type inclusion protein	NA
UHGV-0060191_10	eggNOG-mapper	437329.A5A3Q5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0060191_10	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0060191_10	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0060191_10	Structural annotation	PF06791, MF_04138, COG5281	NA	NA
UHGV-0060191_11	PHROG	phrog_10292	NA	unknown function
UHGV-0060191_11	UniRef90	UniRef90_R6PBR8	TM2 domain protein	NA
UHGV-0060191_11	eggNOG-mapper	762983.HMPREF9444_01879	TM2 domain containing protein	NA
UHGV-0060191_11	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0060191_11	Pfam	PF05154	TM2 domain	TM2
UHGV-0060191_11	COG	COG2314	NA	NA
UHGV-0060191_13	KOfam	K07334	higB-1; toxin HigB-1	NA
UHGV-0060191_13	PHROG	phrog_3066	toxin of TA system	moron, auxiliary metabolic gene and host takeover
UHGV-0060191_13	UniRef90	UniRef90_V8GBE7	Peptidase	NA
UHGV-0060191_13	eggNOG-mapper	1005058.UMN179_02415	RelE-like toxin of type II toxin-antitoxin system HigB	NA
UHGV-0060191_13	Pfam	PF05015	RelE-like toxin of type II toxin-antitoxin system HigB	HigB-like_toxin
UHGV-0060191_13	COG	COG3549	Plasmid maintenance system killer protein	NA
UHGV-0060191_14	KOfam	K21498	higA-1; antitoxin HigA-1	NA
UHGV-0060191_14	PHROG	phrog_1381	plasmid antitoxin with HTH domain	moron, auxiliary metabolic gene and host takeover
UHGV-0060191_14	UniRef90	UniRef90_R6QIE0	Putative integron gene cassette protein	NA
UHGV-0060191_14	eggNOG-mapper	1528098.NOVO_00455	Helix-turn-helix	NA
UHGV-0060191_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060191_14	NCBIFam	TIGR02607.1	HigA family addiction module antitoxin	NA
UHGV-0060191_14	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0060191_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0060191_18	UniRef90	UniRef90_R6PBR3	Tail component protein	NA
UHGV-0060191_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0060191_22	Structural annotation	PF21634, NF040942	NA	NA
UHGV-0060191_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0060191_23	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0060191_23	UniRef90	UniRef90_R6PLJ3	PBSX family phage terminase large subunit	NA
UHGV-0060191_23	eggNOG-mapper	1227266.HMPREF1551_00524	Phage terminase, large subunit, PBSX family	NA
UHGV-0060191_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0060191_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0060191_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0060191_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0060191_23	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0060191_24	PHROG	phrog_2412	NA	unknown function
UHGV-0060191_24	UniRef90	UniRef90_UPI000427CABE	KGG domain-containing protein	NA
UHGV-0060191_24	eggNOG-mapper	1203554.HMPREF1476_00247	NA	NA
UHGV-0060191_27	KOfam	K07691	comA; two-component system, NarL family, competent response regulator ComA	NA
UHGV-0060191_27	UniRef90	UniRef90_R6PDW5	LuxR family response regulator	NA
UHGV-0060191_27	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0060191_27	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0060191_28	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0060191_28	UniRef90	UniRef90_R6PLI8	Putative phage N-6-adenine-methyltransferase	NA
UHGV-0060191_28	eggNOG-mapper	525378.HMPREF0793_1859	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0060191_28	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0060191_28	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0060191_28	Structural annotation	PF05869, MF_00607, TIGR01712, COG0030	NA	NA
UHGV-0060191_30	Pfam	PF11056	Recombination, repair and ssDNA binding protein UvsY	UvsY
UHGV-0060191_37	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0060191_37	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0060191_37	UniRef90	UniRef90_R6PBP2	DNA helicase	NA
UHGV-0060191_37	eggNOG-mapper	1392502.JNIO01000008_gene2955	Participates in initiation and elongation during chromosome replication	NA
UHGV-0060191_37	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0060191_37	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0060191_37	COG	COG0305	Replicative DNA helicase	NA
UHGV-0060191_37	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0060191_38	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0060191_38	UniRef90	UniRef90_A0A2K3J1M8	NA	NA
UHGV-0060191_38	eggNOG-mapper	857293.CAAU_0783	NA	NA
UHGV-0060191_38	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0060191_38	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0060191_40	PHROG	phrog_10048	NA	unknown function
UHGV-0060191_40	UniRef90	UniRef90_A0A379C7X1	Exodeoxyribonuclease X	NA
UHGV-0060191_40	eggNOG-mapper	431943.CKL_3297	NA	NA
UHGV-0060191_41	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0060191_41	UniRef90	UniRef90_A0A843HVZ5	YqaJ viral recombinase family protein	NA
UHGV-0060191_41	eggNOG-mapper	1307436.PBF_04250	YqaJ-like viral recombinase domain	NA
UHGV-0060191_41	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0060191_41	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0060191_41	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0060191_41	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0060191_46	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0060191_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0060191_46	UniRef90	UniRef90_R6PBN1	Helix-turn-helix domain protein	NA
UHGV-0060191_46	eggNOG-mapper	1123376.AUIU01000012_gene1530	sequence-specific DNA binding	NA
UHGV-0060191_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060191_46	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0060191_46	Structural annotation	PF12844, PF13744, MF_00535, NF041951, NF007257, COG1476, COG5499	NA	NA
UHGV-0060191_47	PHROG	phrog_3732	NA	unknown function
UHGV-0060191_47	UniRef90	UniRef90_A0A7Y4YAX2	NA	NA
UHGV-0060191_47	eggNOG-mapper	211586.SO_4263	NA	NA
UHGV-0060191_47	Pfam	PF12686	NA	DUF3800
UHGV-0060191_47	Structural annotation	MF_00053, TIGR00729, COG1039	NA	NA
UHGV-0060191_48	eggNOG-mapper	742727.HMPREF9447_02550	NA	NA
UHGV-0060191_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0060191_50	PHROG	phrog_95	integrase	integration and excision
UHGV-0060191_50	UniRef90	UniRef90_R7J644	Resolvase	NA
UHGV-0060191_50	eggNOG-mapper	1385512.N784_11725	Recombinase	NA
UHGV-0060191_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0060191_50	Pfam	PF07508	Recombinase	Recombinase
UHGV-0060191_50	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0060191_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0060191_50	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-0060191_55	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0060191_55	PHROG	phrog_5867	endolysin	lysis
UHGV-0060191_55	UniRef90	UniRef90_R6QIF3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0060191_55	eggNOG-mapper	388399.SSE37_03470	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0060191_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0060191_55	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0060191_55	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0060191_58	eggNOG-mapper	556269.ACDQ01000006_gene1585	tail collar domain protein	NA
UHGV-0060191_58	COG	COG4675	Phage tail collar domain	NA