UHGV-0060263

Genome information

Genome length 46,092 bps

CDS count 76

Completeness 82.20% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060263
vOTU ID	vOTU-024164
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_71825
BioSample	SAMEA2338863
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.64
Jumbo phage	No

Genome content
Genome length	46,092 bps
GC content	32.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	92.84%
Average CDS length	567.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060263_1	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0060263_1	UniRef90	UniRef90_E7DN71	Queuosine tRNA-ribosyltransferase	NA
UHGV-0060263_1	eggNOG-mapper	59241.E7DN71_BPDP1	tRNA modification	NA
UHGV-0060263_4	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0060263_4	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0060263_4	UniRef90	UniRef90_A0A843GIK1	DNA-directed DNA polymerase	NA
UHGV-0060263_4	eggNOG-mapper	871584.D9ZNH3_9CAUD	DNA polymerase family A	NA
UHGV-0060263_4	PADLOC	drt-cluster58	DRT	DRT
UHGV-0060263_4	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0060263_4	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0060263_4	Structural annotation	PF00476, PF01612, MF_04101, NF004397, COG0749	NA	NA
UHGV-0060263_5	PHROG	phrog_918	NA	unknown function
UHGV-0060263_5	UniRef90	UniRef90_UPI001CCDC3EB	NA	NA
UHGV-0060263_5	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0060263_5	Pfam	PF19791	NA	DUF6275
UHGV-0060263_5	Structural annotation	PF19791	NA	NA
UHGV-0060263_6	PHROG	phrog_14578	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0060263_6	UniRef90	UniRef90_A0A1U9WRB4	Single stranded DNA binding protein	NA
UHGV-0060263_6	eggNOG-mapper	59241.E7DND4_BPDP1	NA	NA
UHGV-0060263_6	Structural annotation	PF08804, MF_04152	NA	NA
UHGV-0060263_8	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0060263_8	UniRef90	UniRef90_A0A3E2NBR1	Endonuclease	NA
UHGV-0060263_8	eggNOG-mapper	279281.Q6J1T5_9CAUD	HNH endonuclease	NA
UHGV-0060263_8	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0060263_8	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0060263_8	Structural annotation	PF20987	NA	NA
UHGV-0060263_9	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0060263_9	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0060263_9	UniRef90	UniRef90_A0A843FQY1	Toprim domain-containing protein	NA
UHGV-0060263_9	eggNOG-mapper	871584.D9ZNG6_9CAUD	Toprim-like	NA
UHGV-0060263_9	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0060263_9	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0060263_9	Structural annotation	PF13155, PF01807, PF08275, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0060263_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0060263_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0060263_11	UniRef90	UniRef90_A0A843GEY3	SF4 helicase domain-containing protein	NA
UHGV-0060263_11	eggNOG-mapper	871584.D9ZNG4_9CAUD	DNA helicase activity	NA
UHGV-0060263_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0060263_11	Structural annotation	PF03796, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0060263_12	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0060263_12	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0060263_12	UniRef90	UniRef90_A0A7X8JSS1	ATP-binding protein	NA
UHGV-0060263_12	eggNOG-mapper	871584.D9ZNG3_9CAUD	IstB-like ATP binding protein	NA
UHGV-0060263_12	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0060263_12	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0060263_13	PHROG	phrog_2113	NA	unknown function
UHGV-0060263_13	Structural annotation	PF06163, TIGR00738, COG3388	NA	NA
UHGV-0060263_14	PHROG	phrog_6969	NA	unknown function
UHGV-0060263_14	UniRef90	UniRef90_UPI0011C34505	conserved phage C-terminal domain-containing protein	NA
UHGV-0060263_14	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0060263_14	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0060263_14	Structural annotation	PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0060263_15	Structural annotation	PF05777, MF_01186, COG2980	NA	NA
UHGV-0060263_16	eggNOG-mapper	397291.C804_06339	NA	NA
UHGV-0060263_17	PHROG	phrog_34398	NA	unknown function
UHGV-0060263_18	Structural annotation	PF13411, NF033499, COG3311	NA	NA
UHGV-0060263_20	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0060263_20	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0060263_20	UniRef90	UniRef90_D9ZNF7	Putative helicase	NA
UHGV-0060263_20	eggNOG-mapper	871584.D9ZNF7_9CAUD	helicase activity	NA
UHGV-0060263_20	PADLOC	ZorD1_00003	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0060263_20	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0060263_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0060263_20	Structural annotation	PF00176, PF00271, PF07443, MF_01821, NF041790, TIGR01158, COG0553	NA	NA
UHGV-0060263_25	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0060263_26	PHROG	phrog_16490	NA	unknown function
UHGV-0060263_26	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0060263_28	PHROG	phrog_21718	NA	unknown function
UHGV-0060263_28	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0060263_30	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0060263_30	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0060263_30	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0060263_32	PHROG	phrog_881	holin	lysis
UHGV-0060263_32	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0060263_32	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0060263_32	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0060263_32	Structural annotation	PF16938	NA	NA
UHGV-0060263_33	PHROG	phrog_1863	NA	unknown function
UHGV-0060263_33	UniRef90	UniRef90_UPI001D0865D2	hemolysin XhlA family protein	NA
UHGV-0060263_34	PHROG	phrog_14030	NA	unknown function
UHGV-0060263_34	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0060263_34	eggNOG-mapper	742765.HMPREF9457_03362	NA	NA
UHGV-0060263_34	Structural annotation	PF18342, NF041850, COG4991	NA	NA
UHGV-0060263_35	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0060263_36	Structural annotation	PF00041	NA	NA
UHGV-0060263_38	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0060263_40	PHROG	phrog_18190	NA	unknown function
UHGV-0060263_40	UniRef90	UniRef90_A0A413Z640	Peptidase S74 domain-containing protein	NA
UHGV-0060263_40	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0060263_40	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0060263_41	PHROG	phrog_1194	NA	unknown function
UHGV-0060263_41	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0060263_41	Pfam	PF20458	NA	DUF6711
UHGV-0060263_41	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0060263_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0060263_42	UniRef90	UniRef90_A0A1C6JZ05	Phage-related protein	NA
UHGV-0060263_42	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-0060263_42	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0060263_42	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0060263_43	PHROG	phrog_706	NA	unknown function
UHGV-0060263_43	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0060263_43	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0060263_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0060263_43	Structural annotation	PF06854	NA	NA
UHGV-0060263_44	PHROG	phrog_11299	NA	unknown function
UHGV-0060263_45	PHROG	phrog_3099	NA	unknown function
UHGV-0060263_45	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0060263_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0060263_46	PHROG	phrog_3266	tail completion	connector
UHGV-0060263_46	Structural annotation	PF12691	NA	NA
UHGV-0060263_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0060263_47	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-0060263_47	eggNOG-mapper	397290.C810_05200	NA	NA
UHGV-0060263_47	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0060263_47	Structural annotation	PF11114	NA	NA
UHGV-0060263_48	PHROG	phrog_3366	NA	unknown function
UHGV-0060263_48	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-0060263_48	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0060263_49	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0060263_51	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0060263_51	eggNOG-mapper	903814.ELI_3113	Phage capsid family	NA
UHGV-0060263_51	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0060263_51	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0060263_51	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0060263_52	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0060263_52	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0060263_52	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0060263_52	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0060263_52	Structural annotation	PF06810	NA	NA
UHGV-0060263_54	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0060263_54	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0060263_54	eggNOG-mapper	33035.JPJF01000030_gene2290	Phage minor capsid protein 2	NA
UHGV-0060263_54	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0060263_54	COG	COG2369	NA	NA
UHGV-0060263_54	Structural annotation	PF06152	NA	NA
UHGV-0060263_55	PHROG	phrog_533	portal protein	head and packaging
UHGV-0060263_55	UniRef90	UniRef90_A0A6L5T8J5	Phage portal protein	NA
UHGV-0060263_55	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0060263_55	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0060263_55	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0060263_56	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0060263_56	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0060263_56	UniRef90	UniRef90_A0A374ADY0	PBSX family phage terminase large subunit	NA
UHGV-0060263_56	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0060263_56	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0060263_56	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0060263_56	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0060263_56	COG	COG1783	Phage terminase large subunit	NA
UHGV-0060263_56	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0060263_57	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0060263_57	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0060263_57	UniRef90	UniRef90_UPI001D065029	terminase small subunit	NA
UHGV-0060263_57	eggNOG-mapper	1280689.AUJC01000003_gene961	Terminase small subunit	NA
UHGV-0060263_57	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0060263_57	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0060263_57	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0060263_58	PHROG	phrog_33130	NA	unknown function
UHGV-0060263_58	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0060263_60	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0060263_60	PHROG	phrog_17417	NA	unknown function
UHGV-0060263_60	UniRef90	UniRef90_UPI0013EEEFDF	cell wall hydrolase	NA
UHGV-0060263_60	eggNOG-mapper	665950.HMPREF1025_01950	Cell Wall Hydrolase	NA
UHGV-0060263_60	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0060263_60	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0060263_60	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0060263_61	Pfam	PF19474	NA	DUF6011
UHGV-0060263_61	Structural annotation	PF19474	NA	NA
UHGV-0060263_64	KOfam	K02340	holA; DNA polymerase III subunit delta [EC:2.7.7.7]	NA
UHGV-0060263_64	PHROG	phrog_20214	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0060263_64	UniRef90	UniRef90_A0A1W1Y355	DNA polymerase III, delta subunit	NA
UHGV-0060263_64	Pfam	PF21694	DNA polymerase III delta subunit, C-terminal domain	DNA_pol3_delta_C
UHGV-0060263_64	COG	COG1466	DNA polymerase III, delta subunit	NA
UHGV-0060263_64	Structural annotation	PF21694, PF06144, MF_01509, NF005134, COG1466	NA	NA
UHGV-0060263_66	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0060263_66	UniRef90	UniRef90_A0A843GQD5	DNA_ligase_aden domain-containing protein	NA
UHGV-0060263_66	eggNOG-mapper	691965.D4P7L3_9CAUD	helicase activity	NA
UHGV-0060263_68	KOfam	K02341	holB; DNA polymerase III subunit delta' [EC:2.7.7.7]	NA
UHGV-0060263_68	PHROG	phrog_5846	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0060263_68	UniRef90	UniRef90_E7DN82	DNA polymerase III gamma-tau subunit	NA
UHGV-0060263_68	eggNOG-mapper	59241.E7DN82_BPDP1	DNA polymerase III, delta subunit	NA
UHGV-0060263_68	Pfam	PF13177	DNA polymerase III, delta subunit	DNA_pol3_delta2
UHGV-0060263_68	Structural annotation	PF13177, MF_04162, NF004047, COG2812	NA	NA
UHGV-0060263_70	KOfam	K02343	dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]	NA
UHGV-0060263_70	PHROG	phrog_5846	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0060263_70	UniRef90	UniRef90_D9ZNI9	Putative DNA polymerase III	NA
UHGV-0060263_70	eggNOG-mapper	871584.D9ZNI9_9CAUD	four-way junction helicase activity	NA
UHGV-0060263_70	Pfam	PF13177	DNA polymerase III, delta subunit	DNA_pol3_delta2
UHGV-0060263_70	Pfam	PF12169	DNA polymerase III subunits gamma and tau domain III	DNA_pol3_gamma3
UHGV-0060263_70	NCBIFam	TIGR02397.1	DNA polymerase III subunit gamma/tau	NA
UHGV-0060263_70	Structural annotation	PF13177, PF12169, PF17864, MF_01509, NF004046, COG2812	NA	NA
UHGV-0060263_71	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0060263_71	eggNOG-mapper	871584.D9ZNI6_9CAUD	NA	NA
UHGV-0060263_71	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0060263_74	Pfam	PF19474	NA	DUF6011
UHGV-0060263_74	Structural annotation	PF19474	NA	NA
UHGV-0060263_75	PHROG	phrog_25027	NA	unknown function
UHGV-0060263_75	UniRef90	UniRef90_F7V9D3	ArdcN domain-containing protein	NA
UHGV-0060263_75	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0060263_75	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN