UHGV-0060281

Genome information

Genome length 32,090 bps

CDS count 44

Completeness 82.39% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060281
vOTU ID	vOTU-036156
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_86809
BioSample	SAMEA2338821
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.02
Jumbo phage	No

Genome content
Genome length	32,090 bps
GC content	45.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.37%
Average CDS length	684.27 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060281_1	UniRef90	UniRef90_A0A1C5PHR0	Ribonuclease H	NA
UHGV-0060281_3	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0060281_3	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0060281_3	UniRef90	UniRef90_A0A1C5VK85	Sporulation initiation inhibitor protein soj	NA
UHGV-0060281_3	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0060281_3	Pfam	PF13614	AAA domain	AAA_31
UHGV-0060281_3	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0060281_3	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0060281_4	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0060281_4	PHROG	phrog_15077	NA	unknown function
UHGV-0060281_4	UniRef90	UniRef90_A0A1C5PHC7	ParB-like nuclease domain	NA
UHGV-0060281_4	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-0060281_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0060281_4	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0060281_4	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0060281_8	PHROG	phrog_10714	NA	unknown function
UHGV-0060281_11	KOfam	K04087	hflC; modulator of FtsH protease HflC	NA
UHGV-0060281_11	PHROG	phrog_200	lipoprotein	other
UHGV-0060281_11	UniRef90	UniRef90_A0A416QWZ0	Prohibitin family protein	NA
UHGV-0060281_11	eggNOG-mapper	537007.BLAHAN_05484	prohibitin homologues	NA
UHGV-0060281_11	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0060281_11	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0060281_11	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0060281_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0060281_12	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0060281_12	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-0060281_12	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0060281_13	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0060281_13	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0060281_13	UniRef90	UniRef90_A0A417CPY2	Terminase small subunit	NA
UHGV-0060281_13	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0060281_13	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0060281_13	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0060281_13	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0060281_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0060281_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0060281_14	UniRef90	UniRef90_A0A417CQ07	Terminase	NA
UHGV-0060281_14	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0060281_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0060281_14	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0060281_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0060281_15	UniRef90	UniRef90_A0A1C5PI86	Phage portal protein, putative, A118 family	NA
UHGV-0060281_15	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0060281_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0060281_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0060281_16	UniRef90	UniRef90_A0A1C5PIA8	Phage minor capsid protein 2	NA
UHGV-0060281_16	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0060281_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0060281_16	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0060281_16	Structural annotation	PF06152	NA	NA
UHGV-0060281_17	Structural annotation	PF11344	NA	NA
UHGV-0060281_18	PHROG	phrog_1048	NA	unknown function
UHGV-0060281_18	UniRef90	UniRef90_A0A396MNX1	NA	NA
UHGV-0060281_18	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0060281_20	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0060281_20	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0060281_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0060281_21	UniRef90	UniRef90_A0A414W378	Phage capsid protein	NA
UHGV-0060281_21	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0060281_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0060281_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0060281_22	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0060281_23	PHROG	phrog_8710	NA	unknown function
UHGV-0060281_23	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0060281_23	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0060281_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0060281_24	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0060281_25	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0060281_25	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-0060281_25	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0060281_25	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0060281_25	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0060281_26	PHROG	phrog_820	major tail protein	tail
UHGV-0060281_26	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0060281_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0060281_27	PHROG	phrog_8300	NA	unknown function
UHGV-0060281_27	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0060281_27	Structural annotation	PF06854	NA	NA
UHGV-0060281_28	PHROG	phrog_8355	NA	unknown function
UHGV-0060281_28	UniRef90	UniRef90_UPI000E5D9789	Gp15 family bacteriophage protein	NA
UHGV-0060281_28	eggNOG-mapper	195103.CPF_0964	NA	NA
UHGV-0060281_29	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0060281_29	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0060281_29	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0060281_29	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0060281_29	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0060281_30	PHROG	phrog_1194	NA	unknown function
UHGV-0060281_30	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0060281_30	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0060281_31	PHROG	phrog_6616	tail protein	tail
UHGV-0060281_31	UniRef90	UniRef90_A0A352BLY8	Peptidase S74 domain-containing protein	NA
UHGV-0060281_31	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0060281_31	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0060281_32	PHROG	phrog_11105	NA	unknown function
UHGV-0060281_33	PHROG	phrog_16164	NA	unknown function
UHGV-0060281_33	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0060281_33	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0060281_34	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0060281_34	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0060281_34	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0060281_34	Structural annotation	PF14359	NA	NA
UHGV-0060281_35	eggNOG-mapper	457412.RSAG_01112	NA	NA
UHGV-0060281_36	PHROG	phrog_19280	NA	unknown function
UHGV-0060281_36	UniRef90	UniRef90_A0A413UF00	NA	NA
UHGV-0060281_36	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0060281_36	Pfam	PF19789	NA	DUF6273
UHGV-0060281_36	Structural annotation	PF19789	NA	NA
UHGV-0060281_38	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0060281_38	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0060281_38	UniRef90	UniRef90_A0A1C5PK20	Retron-type reverse transcriptase	NA
UHGV-0060281_38	eggNOG-mapper	1273103.NM10_00954	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0060281_38	PADLOC	drt-UG17	DRT	DRT
UHGV-0060281_38	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0060281_38	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0060281_40	eggNOG-mapper	33035.JPJF01000043_gene997	NA	NA
UHGV-0060281_41	PHROG	phrog_4105	NA	unknown function
UHGV-0060281_41	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0060281_42	PHROG	phrog_18218	NA	unknown function
UHGV-0060281_42	UniRef90	UniRef90_A0A352BLY3	Ribonuclease	NA
UHGV-0060281_42	eggNOG-mapper	411459.RUMOBE_00910	NA	NA
UHGV-0060281_42	Structural annotation	PF06946	NA	NA
UHGV-0060281_43	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0060281_43	UniRef90	UniRef90_A0A317UAG4	Bro-N domain-containing protein	NA
UHGV-0060281_43	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-0060281_43	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0060281_43	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0060281_43	COG	COG3617	Prophage antirepressor	NA
UHGV-0060281_43	Structural annotation	PF03374, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0060281_44	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0060281_44	PHROG	phrog_670	endolysin	lysis
UHGV-0060281_44	UniRef90	UniRef90_A0A416GY46	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0060281_44	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0060281_44	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0060281_44	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0060281_44	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0060281_44	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0060281_44	Structural annotation	PF01832, NF008758, NF009354, COG5632, COG4193	NA	NA