UHGV-0060293

Genome information

Genome length 61,612 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060293
vOTU ID	vOTU-075299
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_89536
BioSample	SAMEA2466903
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.6
Jumbo phage	No

Genome content
Genome length	61,612 bps
GC content	49.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	96.21%
Average CDS length	977.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060293_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0060293_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0060293_1	UniRef90	UniRef90_E1GWU3	Phage_int_SAM_5 domain-containing protein	NA
UHGV-0060293_1	eggNOG-mapper	679191.HMPREF9018_0457	Belongs to the 'phage' integrase family	NA
UHGV-0060293_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0060293_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0060293_1	Structural annotation	PF13102, PF17293, NF007246, COG4973	NA	NA
UHGV-0060293_5	eggNOG-mapper	1227276.HMPREF9148_00167	NA	NA
UHGV-0060293_6	eggNOG-mapper	1121098.HMPREF1534_01129	NA	NA
UHGV-0060293_7	PHROG	phrog_14770	NA	unknown function
UHGV-0060293_7	UniRef90	UniRef90_U6RLC5	Helicase C-terminal domain-containing protein	NA
UHGV-0060293_7	eggNOG-mapper	1121098.HMPREF1534_01128	CRISPR-associated helicase, Cas3	NA
UHGV-0060293_7	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0060293_7	Pfam	PF18823	Inorganic Pyrophosphatase	InPase
UHGV-0060293_7	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-0060293_7	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-0060293_7	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0060293_7	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0060293_8	PHROG	phrog_156	portal protein	head and packaging
UHGV-0060293_8	eggNOG-mapper	1121098.HMPREF1534_01127	NA	NA
UHGV-0060293_8	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0060293_9	PHROG	phrog_1238	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UHGV-0060293_9	UniRef90	UniRef90_D3S386	Haloacid dehalogenase domain protein hydrolase type 3	NA
UHGV-0060293_9	eggNOG-mapper	589924.Ferp_0546	sugar phosphatases of the HAD superfamily	NA
UHGV-0060293_9	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0060293_9	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0060293_11	PHROG	phrog_22658	NA	unknown function
UHGV-0060293_12	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0060293_12	UniRef90	UniRef90_UPI001021DF7C	terminase	NA
UHGV-0060293_12	eggNOG-mapper	1227276.HMPREF9148_00162	Mu-like prophage FluMu protein gp28	NA
UHGV-0060293_12	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0060293_12	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0060293_13	UniRef90	UniRef90_A0A7I9ZY35	Rhomboid domain-containing protein	NA
UHGV-0060293_13	eggNOG-mapper	1121098.HMPREF1534_01123	Rhomboid family	NA
UHGV-0060293_13	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-0060293_13	Structural annotation	PF01694, MF_01594, TIGR04239, COG0705	NA	NA
UHGV-0060293_14	PHROG	phrog_27246	NA	unknown function
UHGV-0060293_14	eggNOG-mapper	1121098.HMPREF1534_01122	NA	NA
UHGV-0060293_15	PHROG	phrog_22323	NA	unknown function
UHGV-0060293_15	eggNOG-mapper	1227276.HMPREF9148_00160	NA	NA
UHGV-0060293_16	PHROG	phrog_26635	NA	unknown function
UHGV-0060293_16	UniRef90	UniRef90_UPI0019250C39	NA	NA
UHGV-0060293_16	eggNOG-mapper	1227276.HMPREF9148_00159	NA	NA
UHGV-0060293_16	Structural annotation	PF17236, MF_04133, TIGR01554, COG4834	NA	NA
UHGV-0060293_17	PHROG	phrog_23743	NA	unknown function
UHGV-0060293_17	eggNOG-mapper	1121098.HMPREF1534_01119	NA	NA
UHGV-0060293_18	PHROG	phrog_22135	NA	unknown function
UHGV-0060293_18	eggNOG-mapper	679191.HMPREF9018_0450	NA	NA
UHGV-0060293_18	Structural annotation	PF17212	NA	NA
UHGV-0060293_19	eggNOG-mapper	1121098.HMPREF1534_01117	NA	NA
UHGV-0060293_19	Structural annotation	PF21602	NA	NA
UHGV-0060293_21	PHROG	phrog_4201	tail fiber protein	tail
UHGV-0060293_21	eggNOG-mapper	1349822.NSB1T_07530	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0060293_21	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0060293_21	Structural annotation	PF08757, COG5337	NA	NA
UHGV-0060293_24	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0060293_24	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0060293_24	UniRef90	UniRef90_A0A3N2MIV3	RNA-directed DNA polymerase	NA
UHGV-0060293_24	eggNOG-mapper	172045.KS04_18430	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0060293_24	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0060293_24	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0060293_24	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0060293_25	UniRef90	UniRef90_UPI001F20F464	phage holin family protein	NA
UHGV-0060293_25	eggNOG-mapper	742726.HMPREF9448_01212	NA	NA
UHGV-0060293_26	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0060293_26	PHROG	phrog_822	amidase	lysis
UHGV-0060293_26	UniRef90	UniRef90_UPI00177F7043	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0060293_26	eggNOG-mapper	679191.HMPREF9018_0443	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0060293_26	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0060293_26	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0060293_26	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0060293_27	PHROG	phrog_15610	protease	other
UHGV-0060293_27	UniRef90	UniRef90_A0A348JCW5	Putative zincin superfamily protease	NA
UHGV-0060293_27	eggNOG-mapper	1347393.HG726024_gene2889	NA	NA
UHGV-0060293_28	eggNOG-mapper	470145.BACCOP_01117	NA	NA
UHGV-0060293_29	PHROG	phrog_35482	NA	unknown function
UHGV-0060293_29	eggNOG-mapper	1121098.HMPREF1534_01104	NA	NA
UHGV-0060293_30	PHROG	phrog_19255	NA	unknown function
UHGV-0060293_30	eggNOG-mapper	679191.HMPREF9018_0440	NA	NA
UHGV-0060293_31	PHROG	phrog_19255	NA	unknown function
UHGV-0060293_31	eggNOG-mapper	1121098.HMPREF1534_01102	NA	NA
UHGV-0060293_32	PHROG	phrog_32516	NA	unknown function
UHGV-0060293_32	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-0060293_32	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0060293_34	PHROG	phrog_30264	NA	unknown function
UHGV-0060293_34	eggNOG-mapper	679191.HMPREF9018_0438	NA	NA
UHGV-0060293_34	Structural annotation	NF001477	NA	NA
UHGV-0060293_35	PHROG	phrog_30965	NA	unknown function
UHGV-0060293_35	UniRef90	UniRef90_R7IZL2	Conserved domain protein	NA
UHGV-0060293_35	eggNOG-mapper	1227276.HMPREF9148_00142	NA	NA
UHGV-0060293_37	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0060293_37	UniRef90	UniRef90_UPI0011DCE920	NA	NA
UHGV-0060293_37	eggNOG-mapper	762982.HMPREF9442_01214	NA	NA
UHGV-0060293_37	Pfam	PF14359	NA	DUF4406
UHGV-0060293_37	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0060293_38	PHROG	phrog_874	NA	unknown function
UHGV-0060293_38	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0060293_38	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0060293_40	PHROG	phrog_15937	NA	unknown function
UHGV-0060293_40	eggNOG-mapper	445970.ALIPUT_02671	NA	NA
UHGV-0060293_42	Structural annotation	NF037951	NA	NA
UHGV-0060293_43	PHROG	phrog_421	NA	unknown function
UHGV-0060293_43	UniRef90	UniRef90_R5IHK6	NA	NA
UHGV-0060293_43	eggNOG-mapper	357276.EL88_12560	NA	NA
UHGV-0060293_43	Pfam	PF10979	NA	DUF2786
UHGV-0060293_44	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0060293_44	UniRef90	UniRef90_UPI000D8268DD	radical SAM protein	NA
UHGV-0060293_44	eggNOG-mapper	762968.HMPREF9441_00539	radical SAM domain protein	NA
UHGV-0060293_44	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0060293_44	Structural annotation	MF_01864, TIGR00089, COG0621	NA	NA
UHGV-0060293_45	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0060293_45	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0060293_45	UniRef90	UniRef90_E1GUD0	ATPase_AAA_core domain-containing protein	NA
UHGV-0060293_45	eggNOG-mapper	679191.HMPREF9018_0431	DNA-dependent DNA replication	NA
UHGV-0060293_45	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0060293_45	Structural annotation	PF00308, MF_03025, NF005992, COG1484	NA	NA
UHGV-0060293_46	PHROG	phrog_16706	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0060293_46	UniRef90	UniRef90_UPI001021B65C	NA	NA
UHGV-0060293_46	eggNOG-mapper	1121098.HMPREF1534_01079	NA	NA
UHGV-0060293_46	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0060293_46	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0060293_46	Structural annotation	PF14297	NA	NA
UHGV-0060293_47	PHROG	phrog_824	NA	unknown function
UHGV-0060293_47	UniRef90	UniRef90_A0A6M4KAF8	VRR-NUC domain-containing protein	NA
UHGV-0060293_47	eggNOG-mapper	1121098.HMPREF1534_01078	VRR_NUC	NA
UHGV-0060293_47	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0060293_48	PHROG	phrog_19572	NA	unknown function
UHGV-0060293_48	UniRef90	UniRef90_UPI001E597AEB	NA	NA
UHGV-0060293_48	eggNOG-mapper	1121098.HMPREF1534_01077	NA	NA
UHGV-0060293_48	Pfam	PF14902	NA	DUF4494
UHGV-0060293_48	Structural annotation	PF14902	NA	NA
UHGV-0060293_49	PHROG	phrog_32732	NA	unknown function
UHGV-0060293_49	UniRef90	UniRef90_F3QSM2	Conserved domain protein	NA
UHGV-0060293_49	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-0060293_49	dbAPIS	APIS052	NA	NA
UHGV-0060293_49	Structural annotation	PF10458	NA	NA
UHGV-0060293_50	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0060293_50	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0060293_50	UniRef90	UniRef90_A0A3N2LQ49	Integration host factor subunit beta	NA
UHGV-0060293_50	eggNOG-mapper	755732.Fluta_0181	bacterial (prokaryotic) histone like domain	NA
UHGV-0060293_50	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0060293_50	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0060293_50	Structural annotation	PF00216, MF_00381, NF007945, COG0776	NA	NA
UHGV-0060293_51	Structural annotation	PF20331	NA	NA
UHGV-0060293_52	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0060293_52	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0060293_52	UniRef90	UniRef90_A0A6A2JIV5	DEAD/DEAH box helicase	NA
UHGV-0060293_52	eggNOG-mapper	679191.HMPREF9018_0425	SNF2 family N-terminal domain	NA
UHGV-0060293_52	PADLOC	ZorD1_00003	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0060293_52	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0060293_52	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0060293_52	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0060293_52	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0060293_53	PHROG	phrog_27435	NA	unknown function
UHGV-0060293_54	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0060293_54	UniRef90	UniRef90_UPI00102252F1	NA	NA
UHGV-0060293_54	eggNOG-mapper	1046714.AMRX01000006_gene3162	NA	NA
UHGV-0060293_54	Pfam	PF07105	NA	DUF1367
UHGV-0060293_54	Structural annotation	PF07105	NA	NA
UHGV-0060293_55	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0060293_55	UniRef90	UniRef90_UPI00076095A9	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0060293_55	eggNOG-mapper	679191.HMPREF9018_0424	NA	NA
UHGV-0060293_55	Structural annotation	PF06023, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0060293_56	eggNOG-mapper	679191.HMPREF9018_0423	NA	NA
UHGV-0060293_57	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0060293_57	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0060293_57	UniRef90	UniRef90_UPI001020D293	recombinase RecT	NA
UHGV-0060293_57	eggNOG-mapper	679191.HMPREF9018_0422	RecT family	NA
UHGV-0060293_57	Pfam	PF03837	RecT family	RecT
UHGV-0060293_57	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0060293_57	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0060293_58	eggNOG-mapper	1121098.HMPREF1534_01070	NA	NA
UHGV-0060293_58	Structural annotation	NF033787	NA	NA
UHGV-0060293_61	UniRef90	UniRef90_A0A373GAG0	XRE family transcriptional regulator	NA
UHGV-0060293_61	eggNOG-mapper	435591.BDI_0844	Peptidase S24-like	NA
UHGV-0060293_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060293_61	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0060293_61	Structural annotation	PF05339, NF007257, COG3655	NA	NA