UHGV-0060348

Genome information

Genome length 32,473 bps

CDS count 43

Completeness 70.74% (medium-quality)

geNomad score 0.9646

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060348
vOTU ID	vOTU-040622
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_82198
BioSample	SAMEA2338689
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9646
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.32
Jumbo phage	No

Genome content
Genome length	32,473 bps
GC content	30.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	90.36%
Average CDS length	685.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060348_2	KOfam	K15865	CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]	NA
UHGV-0060348_2	UniRef90	UniRef90_R7L9V9	MiaB-like tRNA modifying enzyme	NA
UHGV-0060348_2	eggNOG-mapper	857293.CAAU_2297	MiaB-like tRNA modifying enzyme	NA
UHGV-0060348_2	Pfam	PF00919	NA	UPF0004
UHGV-0060348_2	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0060348_2	NCBIFam	TIGR01579.1	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB	NA
UHGV-0060348_2	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0060348_2	Structural annotation	PF00919, PF20903, MF_01864, TIGR01574, COG0621	NA	NA
UHGV-0060348_3	AcrCatalog	cluster_94195	NA	NA
UHGV-0060348_5	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0060348_5	UniRef90	UniRef90_A0A1Q6L450	HTH cro/C1-type domain-containing protein	NA
UHGV-0060348_5	eggNOG-mapper	537013.CLOSTMETH_03300	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0060348_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0060348_5	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0060348_6	UniRef90	UniRef90_R7F9J1	DNA mismatch repair protein MutS	NA
UHGV-0060348_6	eggNOG-mapper	673862.BABL1_713	that it carries out the mismatch recognition step. This protein has a weak ATPase activity	NA
UHGV-0060348_6	Pfam	PF01624	MutS domain I	MutS_I
UHGV-0060348_6	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-0060348_6	Structural annotation	PF01624, NF006536	NA	NA
UHGV-0060348_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0060348_7	PHROG	phrog_7698	endolysin	lysis
UHGV-0060348_7	UniRef90	UniRef90_UPI001E4B3203	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0060348_7	eggNOG-mapper	1123315.AUIP01000001_gene1438	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0060348_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0060348_7	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0060348_7	COG	COG1388	LysM repeat	NA
UHGV-0060348_7	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0060348_9	PHROG	phrog_937	hemolysin	other
UHGV-0060348_11	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0060348_11	UniRef90	UniRef90_UPI001C3AE76E	Phage tail assembly chaperone	NA
UHGV-0060348_11	eggNOG-mapper	1226322.HMPREF1545_00128	NA	NA
UHGV-0060348_11	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0060348_11	Structural annotation	PF16778	NA	NA
UHGV-0060348_12	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0060348_12	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0060348_12	UniRef90	UniRef90_A0A354MD61	Reverse transcriptase domain-containing protein	NA
UHGV-0060348_12	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-0060348_12	Structural annotation	NF038233	NA	NA
UHGV-0060348_13	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0060348_13	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0060348_13	UniRef90	UniRef90_R6Z282	Putative reverse transcriptase	NA
UHGV-0060348_13	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-0060348_13	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0060348_13	Structural annotation	TIGR04416, COG3344	NA	NA
UHGV-0060348_14	PHROG	phrog_5302	tail protein	tail
UHGV-0060348_14	UniRef90	UniRef90_A0A564TJE3	BppU_N domain-containing protein	NA
UHGV-0060348_14	eggNOG-mapper	411470.RUMGNA_00248	Phage tail-collar fibre protein	NA
UHGV-0060348_14	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0060348_14	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0060348_14	Structural annotation	PF12571, COG1262	NA	NA
UHGV-0060348_16	PHROG	phrog_521	tail protein	tail
UHGV-0060348_16	eggNOG-mapper	1089548.KI783301_gene2598	NA	NA
UHGV-0060348_16	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0060348_16	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0060348_17	PHROG	phrog_6	baseplate protein	tail
UHGV-0060348_17	UniRef90	UniRef90_A0A354MD66	Phage tail protein	NA
UHGV-0060348_17	eggNOG-mapper	642492.Clole_2741	baseplate J-like protein	NA
UHGV-0060348_17	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0060348_17	COG	COG3299	NA	NA
UHGV-0060348_17	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0060348_18	PHROG	phrog_120	baseplate protein	tail
UHGV-0060348_18	UniRef90	UniRef90_A0A354MD67	NA	NA
UHGV-0060348_18	eggNOG-mapper	642492.Clole_2742	NA	NA
UHGV-0060348_18	Pfam	PF10934	NA	DUF2634
UHGV-0060348_18	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0060348_18	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0060348_19	PHROG	phrog_579	NA	unknown function
UHGV-0060348_19	UniRef90	UniRef90_UPI0018AA7FDA	NA	NA
UHGV-0060348_19	eggNOG-mapper	1235790.C805_00605	NA	NA
UHGV-0060348_19	Pfam	PF10844	NA	DUF2577
UHGV-0060348_19	Structural annotation	PF10844	NA	NA
UHGV-0060348_20	KOfam	K06905	NA	NA
UHGV-0060348_20	PHROG	phrog_400	tail protein	tail
UHGV-0060348_20	UniRef90	UniRef90_A0A3S8S1Z4	Hydrolase	NA
UHGV-0060348_20	eggNOG-mapper	642492.Clole_2744	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0060348_20	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0060348_20	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0060348_21	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0060348_21	PHROG	phrog_380	endolysin	lysis
UHGV-0060348_21	UniRef90	UniRef90_A0A354MD71	Peptidoglycan-binding protein LysM	NA
UHGV-0060348_21	eggNOG-mapper	742740.HMPREF9474_02343	Lysin motif	NA
UHGV-0060348_21	Pfam	PF01476	LysM domain	LysM
UHGV-0060348_21	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0060348_21	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0060348_22	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0060348_22	UniRef90	UniRef90_A0A354MD72	TMP_3 domain-containing protein	NA
UHGV-0060348_22	eggNOG-mapper	742740.HMPREF9474_02344	tape measure	NA
UHGV-0060348_22	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0060348_22	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0060348_22	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0060348_22	Structural annotation	PF20155, PF03359, COG3941	NA	NA
UHGV-0060348_23	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0060348_23	UniRef90	UniRef90_A0A3P6JKT4	XkdN-like protein	NA
UHGV-0060348_23	eggNOG-mapper	642492.Clole_2748	PFAM Phage XkdN-like protein	NA
UHGV-0060348_23	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0060348_23	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0060348_24	PHROG	phrog_365	tail protein	tail
UHGV-0060348_24	UniRef90	UniRef90_UPI00100883A2	phage tail tube protein	NA
UHGV-0060348_24	eggNOG-mapper	696281.Desru_1316	Phage tail tube protein	NA
UHGV-0060348_24	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0060348_25	PHROG	phrog_279	tail sheath	tail
UHGV-0060348_25	UniRef90	UniRef90_A0A354MD75	Phage tail protein	NA
UHGV-0060348_25	eggNOG-mapper	696281.Desru_1315	PFAM Phage tail sheath protein	NA
UHGV-0060348_25	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0060348_25	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0060348_25	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0060348_25	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0060348_26	PHROG	phrog_966	NA	unknown function
UHGV-0060348_26	eggNOG-mapper	1195236.CTER_3998	NA	NA
UHGV-0060348_27	PHROG	phrog_525	NA	unknown function
UHGV-0060348_27	UniRef90	UniRef90_R6YTI0	NA	NA
UHGV-0060348_27	eggNOG-mapper	1151292.QEW_1340	NA	NA
UHGV-0060348_27	Pfam	PF20765	NA	DUF6838
UHGV-0060348_27	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0060348_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0060348_28	UniRef90	UniRef90_UPI0015F4E1CA	HK97 gp10 family phage protein	NA
UHGV-0060348_28	eggNOG-mapper	1123511.KB905868_gene178	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0060348_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0060348_28	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0060348_29	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0060348_29	UniRef90	UniRef90_F2JK38	NA	NA
UHGV-0060348_29	eggNOG-mapper	642492.Clole_2754	NA	NA
UHGV-0060348_29	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0060348_32	PHROG	phrog_29	major head protein	head and packaging
UHGV-0060348_32	UniRef90	UniRef90_A0A354MD83	Major capsid protein E	NA
UHGV-0060348_32	eggNOG-mapper	1121121.KB894312_gene3157	Phage major capsid protein E	NA
UHGV-0060348_32	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0060348_32	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0060348_33	PHROG	phrog_909	major head protein	head and packaging
UHGV-0060348_33	UniRef90	UniRef90_R7FKI7	NA	NA
UHGV-0060348_33	eggNOG-mapper	1296662.S5MCF0_9CAUD	NA	NA
UHGV-0060348_33	Structural annotation	PF02924	NA	NA
UHGV-0060348_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0060348_34	UniRef90	UniRef90_R7F9F3	Phage minor structural protein GP20	NA
UHGV-0060348_34	eggNOG-mapper	762051.LKI_09680	Phage minor structural protein GP20	NA
UHGV-0060348_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0060348_34	Structural annotation	PF06810	NA	NA
UHGV-0060348_36	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0060348_36	UniRef90	UniRef90_A0A354MD86	Phage head morphogenesis protein	NA
UHGV-0060348_36	eggNOG-mapper	1151292.QEW_3259	Phage Mu protein F like protein	NA
UHGV-0060348_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0060348_36	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0060348_36	COG	COG2369	NA	NA
UHGV-0060348_36	Structural annotation	PF04233, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0060348_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-0060348_37	UniRef90	UniRef90_A0A354MD87	Phage portal protein	NA
UHGV-0060348_37	eggNOG-mapper	445335.CBN_1374	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0060348_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0060348_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0060348_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0060348_38	PHROG	phrog_10250	NA	unknown function
UHGV-0060348_38	UniRef90	UniRef90_A5MYN4	Phage-related protein	NA
UHGV-0060348_38	eggNOG-mapper	431943.CKL_1870	phage terminase, large subunit, PBSX family	NA
UHGV-0060348_38	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0060348_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0060348_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0060348_38	Structural annotation	PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0060348_39	UniRef90	UniRef90_R7F9E5	Phage terminase large subunit PBSX family	NA
UHGV-0060348_39	eggNOG-mapper	1120746.CCNL01000014_gene2093	DNA packaging	NA
UHGV-0060348_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0060348_40	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0060348_40	UniRef90	UniRef90_R5ZAG3	Phage-related terminase small subunit YqaS	NA
UHGV-0060348_40	eggNOG-mapper	673832.D2IYW0_9CAUD	DNA packaging	NA
UHGV-0060348_40	Structural annotation	PF01920, NF040601, COG5484	NA	NA
UHGV-0060348_41	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0060348_41	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0060348_41	UniRef90	UniRef90_A0A7C6N6B4	DNA modification methylase	NA
UHGV-0060348_41	eggNOG-mapper	1118057.CAGX01000020_gene1624	ParB-like nuclease domain	NA
UHGV-0060348_41	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0060348_41	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0060348_41	COG	COG0863	DNA modification methylase	NA
UHGV-0060348_41	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0060348_42	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0060348_42	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0060348_42	UniRef90	UniRef90_A0A7X5EC65	DNA modification methylase (Fragment)	NA
UHGV-0060348_42	eggNOG-mapper	203119.Cthe_1729	NA	NA
UHGV-0060348_42	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0060348_42	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0060348_42	COG	COG0863	DNA modification methylase	NA
UHGV-0060348_42	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0060348_43	UniRef90	UniRef90_UPI000472E4B8	DNA cytosine methyltransferase	NA
UHGV-0060348_43	eggNOG-mapper	649747.HMPREF0083_01686	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0060348_43	COG	COG0270	DNA-cytosine methylase	NA