UHGV-0060459

Genome information

Genome length 36,579 bps

CDS count 53

Completeness 80.34% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060459
vOTU ID	vOTU-016625
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_81442
BioSample	SAMEA2338714
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.39
Jumbo phage	No

Genome content
Genome length	36,579 bps
GC content	43.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.53%
Average CDS length	649.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060459_1	PHROG	phrog_199	holin	lysis
UHGV-0060459_1	UniRef90	UniRef90_A0A3B8UJ75	Holin	NA
UHGV-0060459_1	eggNOG-mapper	483218.BACPEC_01140	Bacteriophage holin family	NA
UHGV-0060459_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0060459_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0060459_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0060459_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0060459_3	PHROG	phrog_521	tail protein	tail
UHGV-0060459_3	UniRef90	UniRef90_UPI0004E0F5E5	NA	NA
UHGV-0060459_3	eggNOG-mapper	1408437.JNJN01000045_gene575	NA	NA
UHGV-0060459_3	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0060459_3	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0060459_3	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0060459_4	PHROG	phrog_6	baseplate protein	tail
UHGV-0060459_4	UniRef90	UniRef90_A0A354CNF6	Phage tail protein	NA
UHGV-0060459_4	eggNOG-mapper	1195236.CTER_3989	Baseplate J-like protein	NA
UHGV-0060459_4	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0060459_4	COG	COG3299	NA	NA
UHGV-0060459_4	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0060459_5	PHROG	phrog_120	baseplate protein	tail
UHGV-0060459_5	UniRef90	UniRef90_A0A354CNF5	NA	NA
UHGV-0060459_5	eggNOG-mapper	397288.C806_00119	NA	NA
UHGV-0060459_5	Pfam	PF10934	NA	DUF2634
UHGV-0060459_5	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0060459_5	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0060459_6	PHROG	phrog_579	NA	unknown function
UHGV-0060459_6	UniRef90	UniRef90_A0A3Q8S761	NA	NA
UHGV-0060459_6	eggNOG-mapper	397288.C806_00120	NA	NA
UHGV-0060459_6	Pfam	PF10844	NA	DUF2577
UHGV-0060459_6	Structural annotation	PF10844	NA	NA
UHGV-0060459_7	PHROG	phrog_400	tail protein	tail
UHGV-0060459_7	UniRef90	UniRef90_A0A354CNF3	Hydrolase	NA
UHGV-0060459_7	eggNOG-mapper	1029718.SFBM_0133	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0060459_7	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0060459_7	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0060459_8	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0060459_8	PHROG	phrog_380	endolysin	lysis
UHGV-0060459_8	UniRef90	UniRef90_A0A354CP30	Peptidoglycan-binding protein LysM (Fragment)	NA
UHGV-0060459_8	eggNOG-mapper	742740.HMPREF9474_02343	Lysin motif	NA
UHGV-0060459_8	Pfam	PF01476	LysM domain	LysM
UHGV-0060459_8	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0060459_8	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0060459_9	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0060459_9	UniRef90	UniRef90_A0A354CP31	Tail length tape measure protein	NA
UHGV-0060459_9	eggNOG-mapper	742740.HMPREF9474_02344	tape measure	NA
UHGV-0060459_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0060459_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0060459_9	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0060459_9	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0060459_11	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0060459_11	UniRef90	UniRef90_C0DAH8	Phage XkdN-like protein	NA
UHGV-0060459_11	eggNOG-mapper	357809.Cphy_2956	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0060459_11	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0060459_11	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0060459_12	PHROG	phrog_365	tail protein	tail
UHGV-0060459_12	UniRef90	UniRef90_A0A1I0WHP5	Phage tail tube protein	NA
UHGV-0060459_12	eggNOG-mapper	1123511.KB905868_gene174	Phage tail tube protein	NA
UHGV-0060459_12	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0060459_12	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0060459_13	PHROG	phrog_279	tail sheath	tail
UHGV-0060459_13	UniRef90	UniRef90_A0A354CP34	Phage tail protein	NA
UHGV-0060459_13	eggNOG-mapper	1235793.C809_01940	Phage tail sheath protein beta-sandwich domain	NA
UHGV-0060459_13	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0060459_13	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0060459_13	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0060459_13	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0060459_14	PHROG	phrog_966	NA	unknown function
UHGV-0060459_15	PHROG	phrog_525	NA	unknown function
UHGV-0060459_15	UniRef90	UniRef90_R6PDQ8	NA	NA
UHGV-0060459_15	eggNOG-mapper	97138.C820_00230	NA	NA
UHGV-0060459_15	Pfam	PF20765	NA	DUF6838
UHGV-0060459_15	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0060459_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0060459_16	UniRef90	UniRef90_A0A8B2WXM8	HK97 gp10 family phage protein	NA
UHGV-0060459_16	eggNOG-mapper	1203606.HMPREF1526_00328	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0060459_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0060459_16	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0060459_17	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0060459_17	UniRef90	UniRef90_UPI000ACDB421	ABC transporter ATP-binding protein	NA
UHGV-0060459_17	eggNOG-mapper	1321779.HMPREF1984_01303	NA	NA
UHGV-0060459_17	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0060459_18	eggNOG-mapper	608534.GCWU000341_02291	NA	NA
UHGV-0060459_18	Structural annotation	PF05135	NA	NA
UHGV-0060459_19	PHROG	phrog_247	major head protein	head and packaging
UHGV-0060459_19	UniRef90	UniRef90_A0A354CP39	Coat protein	NA
UHGV-0060459_19	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0060459_19	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0060459_19	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0060459_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0060459_20	UniRef90	UniRef90_UPI001F31D767	phage scaffolding protein	NA
UHGV-0060459_20	eggNOG-mapper	357809.Cphy_2965	Phage minor structural protein GP20	NA
UHGV-0060459_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0060459_20	Structural annotation	PF06810	NA	NA
UHGV-0060459_22	Structural annotation	PF20124	NA	NA
UHGV-0060459_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0060459_23	UniRef90	UniRef90_A0A354CP45	Phage head morphogenesis protein	NA
UHGV-0060459_23	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0060459_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0060459_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0060459_23	COG	COG2369	NA	NA
UHGV-0060459_23	Structural annotation	PF04233, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0060459_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0060459_24	UniRef90	UniRef90_A0A354CP46	Phage portal protein	NA
UHGV-0060459_24	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0060459_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0060459_24	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0060459_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0060459_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0060459_25	PHROG	phrog_10250	NA	unknown function
UHGV-0060459_25	UniRef90	UniRef90_A0A354CP47	PBSX family phage terminase large subunit	NA
UHGV-0060459_25	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0060459_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0060459_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0060459_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0060459_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0060459_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0060459_26	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0060459_26	UniRef90	UniRef90_A0A354CP48	Phage portal protein	NA
UHGV-0060459_26	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0060459_26	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0060459_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0060459_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0060459_26	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0060459_27	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0060459_27	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0060459_27	UniRef90	UniRef90_A0A1Q9J5L4	Antitoxin HicB	NA
UHGV-0060459_27	eggNOG-mapper	397291.C804_06459	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0060459_27	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0060459_27	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0060459_27	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0060459_28	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0060459_28	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0060459_28	UniRef90	UniRef90_A0A174K7M0	Addiction module toxin, HicA family	NA
UHGV-0060459_28	eggNOG-mapper	476272.RUMHYD_02842	NA	NA
UHGV-0060459_28	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0060459_28	Structural annotation	PF07927	NA	NA
UHGV-0060459_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0060459_29	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0060459_29	Structural annotation	PF02996	NA	NA
UHGV-0060459_30	eggNOG-mapper	357809.Cphy_2980	NA	NA
UHGV-0060459_30	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0060459_31	PHROG	phrog_17690	NA	unknown function
UHGV-0060459_32	PHROG	phrog_15077	NA	unknown function
UHGV-0060459_32	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0060459_32	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0060459_32	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0060459_33	PHROG	phrog_8470	NA	unknown function
UHGV-0060459_33	UniRef90	UniRef90_UPI00164C094F	PcfJ domain-containing protein	NA
UHGV-0060459_33	eggNOG-mapper	483218.BACPEC_01166	PcfJ-like protein	NA
UHGV-0060459_33	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0060459_33	Structural annotation	PF14284	NA	NA
UHGV-0060459_34	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0060459_35	eggNOG-mapper	1449050.JNLE01000005_gene3947	NA	NA
UHGV-0060459_36	eggNOG-mapper	483218.BACPEC_01170	NA	NA
UHGV-0060459_37	PHROG	phrog_7566	NA	unknown function
UHGV-0060459_37	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0060459_38	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0060459_38	UniRef90	UniRef90_B7AR62	RNase H type-1 domain-containing protein	NA
UHGV-0060459_38	eggNOG-mapper	483218.BACPEC_01172	RNase H	NA
UHGV-0060459_38	COG	COG0328	Ribonuclease HI	NA
UHGV-0060459_38	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0060459_39	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0060459_39	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0060459_39	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0060459_46	PHROG	phrog_34107	NA	unknown function
UHGV-0060459_46	eggNOG-mapper	483218.BACPEC_01178	NA	NA
UHGV-0060459_48	UniRef90	UniRef90_A0A417ACE5	HTH cro/C1-type domain-containing protein	NA
UHGV-0060459_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0060459_49	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0060459_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0060459_49	UniRef90	UniRef90_A0A828T008	HTH cro/C1-type domain-containing protein	NA
UHGV-0060459_49	eggNOG-mapper	396513.SCA_0466	sequence-specific DNA binding	NA
UHGV-0060459_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0060459_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060459_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0060459_49	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0060459_50	PHROG	phrog_87	metallo-protease	other
UHGV-0060459_50	UniRef90	UniRef90_A0A1Y4RLL8	Peptidase_M78 domain-containing protein	NA
UHGV-0060459_50	eggNOG-mapper	742723.HMPREF9477_00938	Zn peptidase	NA
UHGV-0060459_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0060459_50	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0060459_51	PHROG	phrog_1847	NA	unknown function
UHGV-0060459_51	UniRef90	UniRef90_A0A355NQ11	NA	NA
UHGV-0060459_51	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0060459_51	Pfam	PF13250	NA	DUF4041
UHGV-0060459_51	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0060459_51	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0060459_51	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0060459_52	KOfam	K17768	TOM70; mitochondrial import receptor subunit TOM70	NA
UHGV-0060459_52	PHROG	phrog_1847	NA	unknown function
UHGV-0060459_52	UniRef90	UniRef90_A0A174S171	Membrane-bound metallopeptidase	NA
UHGV-0060459_52	eggNOG-mapper	483218.BACPEC_01182	T5orf172	NA
UHGV-0060459_52	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0060459_52	Pfam	PF13432	Tetratricopeptide repeat	TPR_16
UHGV-0060459_52	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0060459_53	KOfam	K04096	smf; DNA processing protein	NA
UHGV-0060459_53	PHROG	phrog_4299	NA	unknown function
UHGV-0060459_53	UniRef90	UniRef90_R5HG11	DNA protecting protein DprA	NA
UHGV-0060459_53	eggNOG-mapper	525904.Tter_0103	DNA recombination-mediator protein A	NA
UHGV-0060459_53	PADLOC	DprA	NA	NA
UHGV-0060459_53	Pfam	PF02481	DNA recombination-mediator protein A	DNA_processg_A
UHGV-0060459_53	COG	COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	NA