UHGV-0060507

Genome information

Genome length 34,872 bps

CDS count 59

Completeness 96.28% (high-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060507
vOTU ID	vOTU-061256
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_104914
BioSample	SAMEA2452114
Country	Australia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.75
Jumbo phage	No

Genome content
Genome length	34,872 bps
GC content	29.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.73%
Average CDS length	546.61 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060507_2	Structural annotation	PF06946	NA	NA
UHGV-0060507_3	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0060507_3	Structural annotation	PF01590, MF_04104, NF041673, COG2203	NA	NA
UHGV-0060507_4	PHROG	phrog_134	NA	unknown function
UHGV-0060507_4	UniRef90	UniRef90_A0A1Q6L3Q4	AraC family transcriptional regulator	NA
UHGV-0060507_4	eggNOG-mapper	1298920.KI911353_gene543	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0060507_4	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0060507_4	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0060507_5	eggNOG-mapper	742733.HMPREF9469_05015	NA	NA
UHGV-0060507_6	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0060507_6	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0060507_6	UniRef90	UniRef90_A0A1Y4IDW2	Reverse transcriptase domain-containing protein	NA
UHGV-0060507_6	eggNOG-mapper	1235802.C823_01102	Reverse transcriptase	NA
UHGV-0060507_6	PADLOC	drt-UG20	DRT	DRT
UHGV-0060507_6	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0060507_6	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0060507_6	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0060507_7	eggNOG-mapper	411460.RUMTOR_01328	NA	NA
UHGV-0060507_7	Structural annotation	PF05635, NF008912	NA	NA
UHGV-0060507_8	UniRef90	UniRef90_A0A1G6NQ88	NA	NA
UHGV-0060507_8	eggNOG-mapper	665950.HMPREF1025_02011	NA	NA
UHGV-0060507_8	Pfam	PF19789	NA	DUF6273
UHGV-0060507_9	PHROG	phrog_1220	head protein	head and packaging
UHGV-0060507_9	UniRef90	UniRef90_A0A2X0ZY62	Phage structural protein, truncation	NA
UHGV-0060507_9	eggNOG-mapper	768704.Desmer_4452	COG NOG18825 non supervised orthologous group	NA
UHGV-0060507_9	Structural annotation	PF20747	NA	NA
UHGV-0060507_10	PHROG	phrog_538	minor tail protein	tail
UHGV-0060507_10	UniRef90	UniRef90_A0A843FNJ4	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0060507_10	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0060507_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0060507_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0060507_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0060507_11	UniRef90	UniRef90_A0A6N7STN1	Phage tail family protein	NA
UHGV-0060507_11	eggNOG-mapper	742740.HMPREF9474_02261	Phage tail protein	NA
UHGV-0060507_11	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0060507_11	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0060507_11	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0060507_12	PHROG	phrog_23464	NA	unknown function
UHGV-0060507_12	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0060507_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0060507_14	PHROG	phrog_88	major tail protein	tail
UHGV-0060507_14	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0060507_14	eggNOG-mapper	1487921.DP68_11355	phage major tail protein	NA
UHGV-0060507_14	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0060507_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0060507_14	COG	COG5492	NA	NA
UHGV-0060507_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0060507_15	Structural annotation	PF05657	NA	NA
UHGV-0060507_16	Structural annotation	TIGR01725	NA	NA
UHGV-0060507_18	UniRef90	UniRef90_A0A6N7SSZ0	Head-tail adaptor protein	NA
UHGV-0060507_18	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0060507_19	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-0060507_19	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0060507_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0060507_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0060507_21	UniRef90	UniRef90_A0A3E3DZT8	Phage major capsid protein	NA
UHGV-0060507_21	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0060507_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0060507_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0060507_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0060507_21	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0060507_22	KOfam	K06904	NA	NA
UHGV-0060507_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0060507_22	UniRef90	UniRef90_A0A6N2W9T5	Caudovirus prohead protease	NA
UHGV-0060507_22	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0060507_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0060507_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0060507_22	COG	COG3740	Phage head maturation protease	NA
UHGV-0060507_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0060507_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0060507_23	UniRef90	UniRef90_R7FBP4	HK97 family phage portal protein	NA
UHGV-0060507_23	eggNOG-mapper	293826.Amet_2412	Portal protein	NA
UHGV-0060507_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0060507_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0060507_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0060507_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0060507_25	UniRef90	UniRef90_A0A6N4TPE2	Phage terminase large subunit	NA
UHGV-0060507_25	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0060507_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0060507_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0060507_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0060507_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0060507_26	PHROG	phrog_1066	NA	unknown function
UHGV-0060507_27	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0060507_27	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0060507_27	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0060507_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0060507_27	Pfam	PF13671	AAA domain	AAA_33
UHGV-0060507_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0060507_27	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0060507_28	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0060507_28	UniRef90	UniRef90_R5ZAG3	Phage-related terminase small subunit YqaS	NA
UHGV-0060507_28	Structural annotation	PF06056, NF040785, COG5484	NA	NA
UHGV-0060507_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0060507_29	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0060507_29	UniRef90	UniRef90_A0A354MD89	Cytosine-specific methyltransferase	NA
UHGV-0060507_29	eggNOG-mapper	649747.HMPREF0083_01686	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0060507_29	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0060507_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0060507_29	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0060507_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0060507_29	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0060507_30	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0060507_30	UniRef90	UniRef90_A0A354MD90	Transcriptional regulator	NA
UHGV-0060507_30	eggNOG-mapper	1444309.JAQG01000013_gene1949	DNA binding	NA
UHGV-0060507_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0060507_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0060507_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0060507_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0060507_31	Structural annotation	PF06530, PF21662, MF_00245, MF_00683, NF001068, COG2739	NA	NA
UHGV-0060507_35	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0060507_37	PHROG	phrog_7839	NA	unknown function
UHGV-0060507_37	eggNOG-mapper	226185.EF_2126	NA	NA
UHGV-0060507_38	PHROG	phrog_2717	NA	unknown function
UHGV-0060507_38	Structural annotation	PF15188, COG2882	NA	NA
UHGV-0060507_40	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0060507_40	UniRef90	UniRef90_R6T064	NUMOD4 domain-containing protein	NA
UHGV-0060507_40	eggNOG-mapper	360911.EAT1b_0007	NUMOD4 motif	NA
UHGV-0060507_40	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0060507_40	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0060507_41	PHROG	phrog_2164	NA	unknown function
UHGV-0060507_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0060507_42	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0060507_42	UniRef90	UniRef90_R6H754	NA	NA
UHGV-0060507_42	eggNOG-mapper	262071.A3QSG6_9CAUD	Endodeoxyribonuclease RusA	NA
UHGV-0060507_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0060507_42	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0060507_48	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0060507_49	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0060507_49	PHROG	phrog_24603	NA	unknown function
UHGV-0060507_49	eggNOG-mapper	262543.Exig_0912	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0060507_49	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0060507_49	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0060507_49	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0060507_51	PHROG	phrog_7880	NA	unknown function
UHGV-0060507_51	eggNOG-mapper	585502.HMPREF0645_2521	NA	NA
UHGV-0060507_56	eggNOG-mapper	1215915.BN193_09250	NA	NA
UHGV-0060507_56	Pfam	PF05339	NA	DUF739
UHGV-0060507_56	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0060507_57	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0060507_57	UniRef90	UniRef90_A0A354MDC5	HTH cro/C1-type domain-containing protein	NA
UHGV-0060507_57	eggNOG-mapper	903814.ELI_0076	Helix-turn-helix XRE-family like proteins	NA
UHGV-0060507_57	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0060507_57	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0060507_57	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0060507_58	PHROG	phrog_10292	NA	unknown function
UHGV-0060507_58	UniRef90	UniRef90_A0A7X5D9A2	NINE protein	NA
UHGV-0060507_58	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0060507_58	Pfam	PF05154	TM2 domain	TM2
UHGV-0060507_58	COG	COG2314	NA	NA
UHGV-0060507_59	KOfam	K14059	int; integrase	NA
UHGV-0060507_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0060507_59	UniRef90	UniRef90_R5LCS8	Phage integrase family site specific recombinase	NA
UHGV-0060507_59	eggNOG-mapper	1236976.JCM16418_768	Belongs to the 'phage' integrase family	NA
UHGV-0060507_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0060507_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0060507_59	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA