UHGV-0060508

Genome information

Genome length 38,422 bps

CDS count 58

Completeness 51.56% (medium-quality)

geNomad score 0.9035

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060508
vOTU ID	vOTU-041319
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_104915
BioSample	SAMEA2452114
Country	Australia
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	51.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9035
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.63
Jumbo phage	No

Genome content
Genome length	38,422 bps
GC content	28.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.95%
Average CDS length	597.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060508_7	PHROG	phrog_38707	NA	unknown function
UHGV-0060508_7	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-0060508_7	COG	COG4675	Phage tail collar domain	NA
UHGV-0060508_9	PHROG	phrog_616	NA	unknown function
UHGV-0060508_9	UniRef90	UniRef90_A0A374HSB4	MuF_C domain-containing protein	NA
UHGV-0060508_9	eggNOG-mapper	1160721.RBI_I01848	NA	NA
UHGV-0060508_9	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0060508_9	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-0060508_12	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0060508_18	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-0060508_18	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0060508_18	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0060508_19	UniRef90	UniRef90_A0A2Z4GUC0	Chitobiase/beta-hexosaminidase	NA
UHGV-0060508_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0060508_21	UniRef90	UniRef90_A0A1V5HQM8	Phage minor capsid protein 2	NA
UHGV-0060508_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0060508_22	UniRef90	UniRef90_A0A1V5HPY3	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0060508_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0060508_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0060508_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0060508_23	UniRef90	UniRef90_A0A1V5HPI4	Phage terminase large subunit	NA
UHGV-0060508_23	eggNOG-mapper	764291.STRUR_2108	Phage terminase, large subunit	NA
UHGV-0060508_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0060508_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0060508_23	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0060508_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0060508_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0060508_28	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0060508_32	PHROG	phrog_774	NA	unknown function
UHGV-0060508_32	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0060508_34	eggNOG-mapper	1336234.JAGN01000004_gene538	NA	NA
UHGV-0060508_35	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0060508_35	Pfam	PF08271	TFIIB zinc-binding	TF_Zn_Ribbon
UHGV-0060508_36	PHROG	phrog_3136	NA	unknown function
UHGV-0060508_37	PHROG	phrog_8470	NA	unknown function
UHGV-0060508_37	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0060508_38	PHROG	phrog_7445	NA	unknown function
UHGV-0060508_38	UniRef90	UniRef90_A0A3N2L636	PcfK-like protein	NA
UHGV-0060508_38	eggNOG-mapper	1122971.BAME01000021_gene2334	PcfK-like protein	NA
UHGV-0060508_38	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0060508_39	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0060508_39	UniRef90	UniRef90_A0A6A4UXR4	Phage replication initiation	NA
UHGV-0060508_39	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-0060508_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0060508_39	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0060508_40	PHROG	phrog_2113	NA	unknown function
UHGV-0060508_40	eggNOG-mapper	1160721.RBI_II00485	NA	NA
UHGV-0060508_40	Structural annotation	PF00486, COG1654	NA	NA
UHGV-0060508_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0060508_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0060508_41	UniRef90	UniRef90_A0A7C1CPT1	Single-stranded DNA-binding protein	NA
UHGV-0060508_41	eggNOG-mapper	1211817.CCAT010000049_gene2463	Single-strand binding protein family	NA
UHGV-0060508_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0060508_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0060508_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0060508_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0060508_41	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0060508_42	PHROG	phrog_10048	NA	unknown function
UHGV-0060508_42	eggNOG-mapper	1111134.HMPREF1253_1200	NA	NA
UHGV-0060508_42	Structural annotation	PF06420, TIGR00607, COG5055	NA	NA
UHGV-0060508_44	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0060508_44	UniRef90	UniRef90_A0A1C5T0L2	PD-(D/E)XK nuclease superfamily	NA
UHGV-0060508_44	eggNOG-mapper	1122981.AUME01000026_gene554	YqaJ viral recombinase family	NA
UHGV-0060508_44	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0060508_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060508_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0060508_49	PHROG	phrog_1090	NA	unknown function
UHGV-0060508_49	UniRef90	UniRef90_UPI00188B4815	SinR family protein	NA
UHGV-0060508_51	UniRef90	UniRef90_A0A3C1INN2	NA	NA
UHGV-0060508_51	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0060508_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0060508_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0060508_52	UniRef90	UniRef90_UPI0003F652EE	helix-turn-helix domain-containing protein	NA
UHGV-0060508_52	eggNOG-mapper	1280689.AUJC01000011_gene1494	Helix-turn-helix XRE-family like proteins	NA
UHGV-0060508_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060508_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0060508_53	PHROG	phrog_87	metallo-protease	other
UHGV-0060508_54	PHROG	phrog_1281	NA	unknown function
UHGV-0060508_54	UniRef90	UniRef90_UPI000BFD0D88	NA	NA
UHGV-0060508_54	eggNOG-mapper	1408438.JADD01000021_gene432	NA	NA
UHGV-0060508_54	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0060508_54	COG	COG3600	NA	NA
UHGV-0060508_54	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0060508_57	KOfam	K14059	int; integrase	NA
UHGV-0060508_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0060508_57	UniRef90	UniRef90_A0A2C1C8B2	Site-specific integrase	NA
UHGV-0060508_57	eggNOG-mapper	279010.BL03620	Belongs to the 'phage' integrase family	NA
UHGV-0060508_57	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0060508_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0060508_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0060508_57	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0060508_58	Pfam	PF08238	Sel1 repeat	Sel1
UHGV-0060508_58	COG	COG0790	TPR repeat	NA