UHGV-0060532

Genome information

Genome length 36,674 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060532
vOTU ID	vOTU-011489
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_71182
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.24
Jumbo phage	No

Genome content
Genome length	36,674 bps
GC content	41.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	93.43%
Average CDS length	628.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060532_2	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0060532_3	PHROG	phrog_1257	ribosome associated inhibitor A; zinc finger domain	moron, auxiliary metabolic gene and host takeover
UHGV-0060532_3	UniRef90	UniRef90_A0A3E4LX24	XRE family transcriptional regulator	NA
UHGV-0060532_3	eggNOG-mapper	411459.RUMOBE_01706	NA	NA
UHGV-0060532_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060532_4	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0060532_4	PHROG	phrog_3393	endolysin	lysis
UHGV-0060532_4	UniRef90	UniRef90_A0A3E4LXG7	NlpC/P60 domain-containing protein	NA
UHGV-0060532_4	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0060532_4	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0060532_4	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0060532_4	Structural annotation	PF05382, NF033743, COG5492, COG0791	NA	NA
UHGV-0060532_5	PHROG	phrog_18218	NA	unknown function
UHGV-0060532_5	UniRef90	UniRef90_A0A3E4LX14	Ribonuclease	NA
UHGV-0060532_5	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-0060532_5	Structural annotation	PF06946	NA	NA
UHGV-0060532_6	PHROG	phrog_937	hemolysin	other
UHGV-0060532_6	eggNOG-mapper	742740.HMPREF9474_03172	NA	NA
UHGV-0060532_7	PHROG	phrog_25468	NA	unknown function
UHGV-0060532_7	eggNOG-mapper	742733.HMPREF9469_05016	NA	NA
UHGV-0060532_8	PHROG	phrog_4013	NA	unknown function
UHGV-0060532_9	UniRef90	UniRef90_A0A374E9Q0	Collagen-like protein	NA
UHGV-0060532_9	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0060532_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0060532_9	Structural annotation	PF10651, NF007636, COG5456	NA	NA
UHGV-0060532_10	PHROG	phrog_14030	NA	unknown function
UHGV-0060532_10	UniRef90	UniRef90_A0A4R4FEU7	NlpC/P60 domain-containing protein	NA
UHGV-0060532_10	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0060532_10	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0060532_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0060532_10	Structural annotation	PF05382, NF033742, COG0791	NA	NA
UHGV-0060532_11	PHROG	phrog_13289	tail protein	tail
UHGV-0060532_11	UniRef90	UniRef90_D4M5A0	Phage minor structural protein, N-terminal region	NA
UHGV-0060532_11	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0060532_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0060532_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0060532_11	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0060532_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0060532_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0060532_12	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-0060532_12	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0060532_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0060532_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0060532_13	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0060532_13	UniRef90	UniRef90_UPI0006C3C180	phage tail tape measure protein	NA
UHGV-0060532_13	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0060532_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0060532_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0060532_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0060532_15	PHROG	phrog_88	major tail protein	tail
UHGV-0060532_15	UniRef90	UniRef90_UPI0006C1EB28	phage tail protein	NA
UHGV-0060532_15	eggNOG-mapper	543734.LCABL_09910	NA	NA
UHGV-0060532_15	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0060532_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0060532_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0060532_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0060532_16	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0060532_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0060532_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0060532_16	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0060532_17	Structural annotation	PF05657	NA	NA
UHGV-0060532_18	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0060532_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0060532_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0060532_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0060532_20	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0060532_20	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0060532_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0060532_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0060532_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0060532_20	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0060532_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0060532_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0060532_21	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0060532_21	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0060532_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0060532_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0060532_21	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0060532_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0060532_22	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0060532_22	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0060532_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0060532_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0060532_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0060532_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0060532_23	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0060532_23	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0060532_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0060532_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0060532_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0060532_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0060532_24	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0060532_24	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0060532_24	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0060532_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0060532_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0060532_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0060532_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0060532_25	UniRef90	UniRef90_A0A1Q6K9L9	HNHc domain-containing protein	NA
UHGV-0060532_25	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0060532_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0060532_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0060532_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0060532_26	UniRef90	UniRef90_UPI001899709D	NA	NA
UHGV-0060532_26	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0060532_26	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0060532_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0060532_26	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0060532_27	AcrCatalog	cluster_12858	NA	NA
UHGV-0060532_29	Structural annotation	PF09889, MF_00649, COG4068	NA	NA
UHGV-0060532_30	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0060532_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0060532_30	UniRef90	UniRef90_A0A3D2TUS5	Integrase	NA
UHGV-0060532_30	eggNOG-mapper	1514668.JOOA01000001_gene378	Belongs to the 'phage' integrase family	NA
UHGV-0060532_30	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0060532_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0060532_30	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0060532_30	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0060532_31	PHROG	phrog_7566	NA	unknown function
UHGV-0060532_31	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0060532_32	eggNOG-mapper	1196324.A374_15868	NA	NA
UHGV-0060532_33	PHROG	phrog_15077	NA	unknown function
UHGV-0060532_33	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0060532_33	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0060532_33	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0060532_34	PHROG	phrog_8470	NA	unknown function
UHGV-0060532_34	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0060532_34	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0060532_34	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0060532_34	Structural annotation	PF14284	NA	NA
UHGV-0060532_35	PHROG	phrog_4433	NA	unknown function
UHGV-0060532_35	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0060532_35	Structural annotation	PF12120, NF000066	NA	NA
UHGV-0060532_36	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0060532_37	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0060532_37	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0060532_37	UniRef90	UniRef90_A0A373MPV2	Ribonuclease HI	NA
UHGV-0060532_37	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0060532_37	Pfam	PF00075	RNase H	RNase_H
UHGV-0060532_37	COG	COG0328	Ribonuclease HI	NA
UHGV-0060532_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0060532_38	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-0060532_38	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0060532_40	KOfam	K14059	int; integrase	NA
UHGV-0060532_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0060532_40	UniRef90	UniRef90_R9LR72	Tyr recombinase domain-containing protein	NA
UHGV-0060532_40	eggNOG-mapper	1235796.C815_01058	Belongs to the 'phage' integrase family	NA
UHGV-0060532_40	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0060532_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0060532_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0060532_40	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0060532_41	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0060532_41	PHROG	phrog_5696	NA	unknown function
UHGV-0060532_41	UniRef90	UniRef90_A0A1C5WE14	Type I restriction-modification system methyltransferase subunit	NA
UHGV-0060532_41	eggNOG-mapper	1335760.ASTG01000023_gene576	N-6 DNA Methylase	NA
UHGV-0060532_41	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0060532_41	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0060532_41	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0060532_41	Structural annotation	COG0286	NA	NA
UHGV-0060532_46	PHROG	phrog_9607	NA	unknown function
UHGV-0060532_46	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-0060532_46	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0060532_48	eggNOG-mapper	1280698.AUJS01000007_gene1007	NA	NA
UHGV-0060532_50	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0060532_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0060532_50	UniRef90	UniRef90_A0A1Q6K9L5	Transcriptional regulator	NA
UHGV-0060532_50	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0060532_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060532_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0060532_50	Structural annotation	PF01381, NF041951, COG2944	NA	NA
UHGV-0060532_52	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0060532_52	UniRef90	UniRef90_UPI000E486504	helix-turn-helix domain-containing protein	NA
UHGV-0060532_52	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0060532_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0060532_52	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0060532_53	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0060532_53	UniRef90	UniRef90_A0A174J1E0	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0060532_53	eggNOG-mapper	411469.EUBHAL_00999	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0060532_53	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0060532_53	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0060532_53	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0060532_54	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0060532_54	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0060532_54	UniRef90	UniRef90_C0EUB6	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0060532_54	eggNOG-mapper	411469.EUBHAL_01000	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0060532_54	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0060532_54	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0060532_54	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0060532_55	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0060532_55	PHROG	phrog_95	integrase	integration and excision
UHGV-0060532_55	UniRef90	UniRef90_UPI0006D21E11	recombinase family protein	NA
UHGV-0060532_55	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0060532_55	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0060532_55	Pfam	PF07508	Recombinase	Recombinase
UHGV-0060532_55	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0060532_55	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0060532_55	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA