UHGV-0060590

Genome information

Genome length 53,390 bps

CDS count 81

Completeness 90.52% (high-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060590
vOTU ID	vOTU-069307
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_89621
BioSample	SAMEA2467018
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.52% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.9
Jumbo phage	No

Genome content
Genome length	53,390 bps
GC content	38.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	87.90%
Average CDS length	581.59 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060590_2	Structural annotation	PF05641	NA	NA
UHGV-0060590_3	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0060590_3	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0060590_3	UniRef90	UniRef90_A0A1I0BHE8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0060590_3	eggNOG-mapper	411490.ANACAC_02374	NA	NA
UHGV-0060590_3	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-0060590_3	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0060590_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0060590_4	UniRef90	UniRef90_UPI001D094304	DNA cytosine methyltransferase	NA
UHGV-0060590_4	eggNOG-mapper	1121115.AXVN01000007_gene3542	C-5 cytosine-specific DNA methylase	NA
UHGV-0060590_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0060590_5	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0060590_5	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0060590_5	UniRef90	UniRef90_A0A1Q6KI63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0060590_5	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0060590_5	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0060590_5	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0060590_5	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0060590_5	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0060590_5	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0060590_8	PHROG	phrog_19106	NA	unknown function
UHGV-0060590_8	UniRef90	UniRef90_A0A417B0D0	GIY-YIG nuclease family protein	NA
UHGV-0060590_8	eggNOG-mapper	397290.C810_01509	NA	NA
UHGV-0060590_8	Structural annotation	TIGR01453	NA	NA
UHGV-0060590_10	PHROG	phrog_21026	NA	unknown function
UHGV-0060590_11	UniRef90	UniRef90_R5TJQ4	Carbamoyl-phosphate synthase L chain ATP-binding protein	NA
UHGV-0060590_12	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0060590_12	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0060590_12	UniRef90	UniRef90_A0A843HNI1	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0060590_12	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0060590_12	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0060590_12	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0060590_12	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0060590_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0060590_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0060590_13	UniRef90	UniRef90_A0A6L9HLK2	Single-stranded DNA-binding protein	NA
UHGV-0060590_13	eggNOG-mapper	622312.ROSEINA2194_04345	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0060590_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0060590_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0060590_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0060590_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0060590_13	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0060590_15	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0060590_15	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0060590_15	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0060590_15	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0060590_15	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0060590_15	dbAPIS	APIS058	NA	NA
UHGV-0060590_15	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0060590_15	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0060590_16	PHROG	phrog_13999	NA	unknown function
UHGV-0060590_17	PHROG	phrog_25456	NA	unknown function
UHGV-0060590_18	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0060590_18	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-0060590_18	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0060590_18	Pfam	PF03837	RecT family	RecT
UHGV-0060590_18	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0060590_20	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0060590_20	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0060590_20	UniRef90	UniRef90_A0A4Q5C974	Reverse transcriptase domain-containing protein	NA
UHGV-0060590_20	eggNOG-mapper	658655.HMPREF0988_00871	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0060590_20	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0060590_20	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0060590_20	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0060590_20	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0060590_21	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0060590_21	UniRef90	UniRef90_A0A4Q5C8K1	Four helix bundle protein	NA
UHGV-0060590_21	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-0060590_21	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0060590_21	Structural annotation	PF05635, NF033474, COG3308	NA	NA
UHGV-0060590_22	PHROG	phrog_9958	NA	unknown function
UHGV-0060590_22	UniRef90	UniRef90_A0A4Q5C6P1	NA	NA
UHGV-0060590_22	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0060590_22	Pfam	PF19789	NA	DUF6273
UHGV-0060590_22	Structural annotation	PF19789	NA	NA
UHGV-0060590_23	PHROG	phrog_9958	NA	unknown function
UHGV-0060590_23	eggNOG-mapper	658655.HMPREF0988_00874	NA	NA
UHGV-0060590_23	Pfam	PF19789	NA	DUF6273
UHGV-0060590_23	Structural annotation	PF19789	NA	NA
UHGV-0060590_25	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0060590_25	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0060590_25	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0060590_25	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0060590_25	Pfam	PF13476	AAA domain	AAA_23
UHGV-0060590_25	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0060590_25	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0060590_28	PHROG	phrog_4292	NA	unknown function
UHGV-0060590_28	eggNOG-mapper	397290.C810_01449	NA	NA
UHGV-0060590_33	Structural annotation	PF12729	NA	NA
UHGV-0060590_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0060590_34	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0060590_34	eggNOG-mapper	469609.HMPREF0847_00376	DNA-binding helix-turn-helix protein	NA
UHGV-0060590_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060590_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0060590_34	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0060590_35	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0060590_35	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0060590_35	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0060590_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060590_35	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0060590_35	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0060590_36	PHROG	phrog_32721	NA	unknown function
UHGV-0060590_36	UniRef90	UniRef90_X8HUR1	Putative lipoprotein	NA
UHGV-0060590_36	eggNOG-mapper	1476973.JMMB01000007_gene2215	NA	NA
UHGV-0060590_36	Structural annotation	PF21223, TIGR04209	NA	NA
UHGV-0060590_37	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0060590_37	PHROG	phrog_3088	amidase	lysis
UHGV-0060590_37	UniRef90	UniRef90_A0A844E740	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0060590_37	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0060590_37	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0060590_37	Pfam	PF21540	Choline-binding repeat	Choline_bind_4
UHGV-0060590_37	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0060590_37	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0060590_38	PHROG	phrog_6616	tail protein	tail
UHGV-0060590_38	UniRef90	UniRef90_R5QUN9	Peptidase S74 domain-containing protein	NA
UHGV-0060590_38	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0060590_38	COG	COG4926	Phage-related protein	NA
UHGV-0060590_39	PHROG	phrog_1194	NA	unknown function
UHGV-0060590_39	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0060590_40	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0060590_40	UniRef90	UniRef90_A0A1C5WKI4	Phage-related protein	NA
UHGV-0060590_40	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0060590_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0060590_42	PHROG	phrog_36112	NA	unknown function
UHGV-0060590_42	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0060590_42	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0060590_42	Structural annotation	PF16478	NA	NA
UHGV-0060590_43	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0060590_43	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0060590_44	Structural annotation	PF05657	NA	NA
UHGV-0060590_45	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0060590_45	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0060590_45	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0060590_46	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0060590_47	PHROG	phrog_1129	holin	lysis
UHGV-0060590_47	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0060590_47	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0060590_47	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0060590_47	Structural annotation	PF06946	NA	NA
UHGV-0060590_48	PHROG	phrog_4105	NA	unknown function
UHGV-0060590_48	eggNOG-mapper	1256908.HMPREF0373_00464	NA	NA
UHGV-0060590_49	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0060590_50	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0060590_50	Structural annotation	PF21169	NA	NA
UHGV-0060590_51	PHROG	phrog_29	major head protein	head and packaging
UHGV-0060590_51	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0060590_51	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0060590_51	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0060590_51	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0060590_52	PHROG	phrog_909	major head protein	head and packaging
UHGV-0060590_52	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0060590_52	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0060590_53	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0060590_53	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0060590_54	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0060590_54	Structural annotation	PF10651, PF20328	NA	NA
UHGV-0060590_55	PHROG	phrog_19695	NA	unknown function
UHGV-0060590_55	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-0060590_55	Structural annotation	PF19714	NA	NA
UHGV-0060590_56	PHROG	phrog_64	portal protein	head and packaging
UHGV-0060590_56	UniRef90	UniRef90_UPI001D0761B7	phage portal protein	NA
UHGV-0060590_56	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0060590_56	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0060590_56	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0060590_57	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0060590_57	UniRef90	UniRef90_W8TM41	RNA polymerase, sigma-24 subunit, ECF subfamily	NA
UHGV-0060590_57	eggNOG-mapper	1286171.EAL2_c19860	sigma factor activity	NA
UHGV-0060590_57	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0060590_57	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0060590_58	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0060590_58	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0060590_58	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0060590_58	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0060590_58	COG	COG5410	NA	NA
UHGV-0060590_58	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0060590_59	UniRef90	UniRef90_UPI001F3ECC8A	NA	NA
UHGV-0060590_59	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0060590_59	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0060590_61	PHROG	phrog_25639	NA	unknown function
UHGV-0060590_61	eggNOG-mapper	397290.C810_01381	NA	NA
UHGV-0060590_62	Structural annotation	PF04466	NA	NA
UHGV-0060590_65	eggNOG-mapper	318464.IO99_07375	NA	NA
UHGV-0060590_66	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0060590_66	UniRef90	UniRef90_A0A3R6KI17	Nucleotide pyrophosphohydrolase	NA
UHGV-0060590_66	eggNOG-mapper	935948.KE386495_gene1342	MazG nucleotide pyrophosphohydrolase	NA
UHGV-0060590_66	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0060590_66	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0060590_66	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0060590_67	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-0060590_71	UniRef90	UniRef90_UPI001D08D759	helix-turn-helix transcriptional regulator	NA
UHGV-0060590_71	eggNOG-mapper	1235790.C805_00736	Transcriptional regulator	NA
UHGV-0060590_71	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0060590_71	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0060590_71	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0060590_72	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0060590_72	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-0060590_72	Structural annotation	PF07275, COG4734	NA	NA
UHGV-0060590_74	eggNOG-mapper	397290.C810_01347	NA	NA
UHGV-0060590_74	Structural annotation	PF18267	NA	NA
UHGV-0060590_76	PHROG	phrog_1233	NA	unknown function
UHGV-0060590_76	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0060590_77	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0060590_78	PHROG	phrog_20016	NA	unknown function
UHGV-0060590_78	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0060590_78	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0060590_78	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0060590_79	PHROG	phrog_16490	NA	unknown function
UHGV-0060590_79	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0060590_80	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0060590_81	PHROG	phrog_21718	NA	unknown function
UHGV-0060590_81	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0060590_81	Structural annotation	NF033819	NA	NA