UHGV-0060610

Genome information

Genome length 20,716 bps

CDS count 28

Completeness 56.52% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060610
vOTU ID	vOTU-039481
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_80006
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.49
Jumbo phage	No

Genome content
Genome length	20,716 bps
GC content	44.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	96.19%
Average CDS length	716.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060610_1	UniRef90	UniRef90_UPI001F2866A0	NA	NA
UHGV-0060610_1	Pfam	PF20124	NA	DUF6514
UHGV-0060610_1	Structural annotation	PF20124	NA	NA
UHGV-0060610_3	KOfam	K14059	int; integrase	NA
UHGV-0060610_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0060610_3	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-0060610_3	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0060610_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0060610_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0060610_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0060610_4	eggNOG-mapper	755731.Clo1100_1139	NA	NA
UHGV-0060610_5	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0060610_5	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0060610_5	UniRef90	UniRef90_D4JVL7	Exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0060610_5	eggNOG-mapper	877424.ATWC01000001_gene2107	EXOIII	NA
UHGV-0060610_5	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0060610_5	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0060610_5	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0060610_5	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0060610_5	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0060610_5	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847, COG5275	NA	NA
UHGV-0060610_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0060610_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0060610_7	UniRef90	UniRef90_A0A3B8P2Z5	Transcriptional regulator	NA
UHGV-0060610_7	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-0060610_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060610_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0060610_8	UniRef90	UniRef90_A0A2N6UIC0	NA	NA
UHGV-0060610_8	eggNOG-mapper	445974.CLORAM_02965	NA	NA
UHGV-0060610_8	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0060610_11	PHROG	phrog_38338	NA	unknown function
UHGV-0060610_11	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-0060610_12	PHROG	phrog_8470	NA	unknown function
UHGV-0060610_12	UniRef90	UniRef90_A0A315Y141	PcfJ-like protein	NA
UHGV-0060610_12	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-0060610_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0060610_12	Structural annotation	PF14284	NA	NA
UHGV-0060610_13	PHROG	phrog_15609	NA	unknown function
UHGV-0060610_13	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0060610_13	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0060610_13	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0060610_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0060610_14	UniRef90	UniRef90_R6R2R3	Siphovirus Gp157	NA
UHGV-0060610_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0060610_14	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0060610_15	PHROG	phrog_1366	NA	unknown function
UHGV-0060610_15	UniRef90	UniRef90_R6S946	AAA domain-containing protein	NA
UHGV-0060610_15	eggNOG-mapper	1410670.JHXF01000015_gene2269	AAA domain	NA
UHGV-0060610_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0060610_15	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0060610_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0060610_16	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0060610_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0060610_16	UniRef90	UniRef90_R6RJE0	DNA or RNA helicases of superfamily II	NA
UHGV-0060610_16	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0060610_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0060610_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0060610_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0060610_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0060610_16	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0060610_17	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0060610_17	UniRef90	UniRef90_A0A6N4AKU7	VRR-NUC domain-containing protein	NA
UHGV-0060610_17	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0060610_17	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0060610_17	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0060610_18	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0060610_18	UniRef90	UniRef90_UPI0019172865	NA	NA
UHGV-0060610_18	eggNOG-mapper	1002809.SSIL_1401	NA	NA
UHGV-0060610_18	Pfam	PF05037	NA	DUF669
UHGV-0060610_18	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0060610_19	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0060610_19	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0060610_19	UniRef90	UniRef90_A0A6N4ALN1	SF3 helicase domain-containing protein	NA
UHGV-0060610_19	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0060610_19	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0060610_19	Pfam	PF19263	NA	DUF5906
UHGV-0060610_19	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0060610_19	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0060610_19	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0060610_19	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0060610_21	UniRef90	UniRef90_B0MKX7	NA	NA
UHGV-0060610_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0060610_22	UniRef90	UniRef90_A0A174ZYK6	Phage transcriptional regulator, RinA family	NA
UHGV-0060610_22	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0060610_22	Structural annotation	PF07374	NA	NA
UHGV-0060610_23	AcrCatalog	cluster_211731	NA	NA
UHGV-0060610_23	Pfam	PF20505	NA	DUF6731
UHGV-0060610_23	Structural annotation	PF20505	NA	NA
UHGV-0060610_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0060610_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0060610_25	UniRef90	UniRef90_R6RJD3	Phage Terminase Small Subunit	NA
UHGV-0060610_25	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0060610_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0060610_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0060610_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0060610_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0060610_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0060610_26	UniRef90	UniRef90_R6RCX9	Phage terminase large subunit PBSX family	NA
UHGV-0060610_26	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0060610_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0060610_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0060610_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0060610_27	UniRef90	UniRef90_R6RJD0	Putative phage minor capsid protein	NA
UHGV-0060610_27	eggNOG-mapper	1122918.KB907248_gene4503	NA	NA
UHGV-0060610_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0060610_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0060610_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0060610_28	UniRef90	UniRef90_A0A357AYQ8	Capsid protein (Fragment)	NA
UHGV-0060610_28	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-0060610_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0060610_28	COG	COG2369	NA	NA
UHGV-0060610_28	Structural annotation	PF06152	NA	NA