UHGV-0060785

Genome information

Genome length 38,854 bps

CDS count 50

Completeness 87.68% (medium-quality)

geNomad score 0.9681

Prediction confidence Confident

Genome information
Genome ID	UHGV-0060785
vOTU ID	vOTU-021827
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_83609
BioSample	SAMEA2338824
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9681
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.74
Jumbo phage	No

Genome content
Genome length	38,854 bps
GC content	48.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.07%
Average CDS length	725.58 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0060785_1	KOfam	K14059	int; integrase	NA
UHGV-0060785_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0060785_1	UniRef90	UniRef90_UPI0012BC6D7A	site-specific integrase	NA
UHGV-0060785_1	eggNOG-mapper	469610.HMPREF0189_01846	Belongs to the 'phage' integrase family	NA
UHGV-0060785_1	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0060785_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0060785_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0060785_1	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0060785_2	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0060785_2	UniRef90	UniRef90_UPI0012BBDD1D	helix-turn-helix domain-containing protein	NA
UHGV-0060785_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0060785_2	Structural annotation	PF12728, NF033499, COG3311	NA	NA
UHGV-0060785_3	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0060785_5	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0060785_5	UniRef90	UniRef90_D9Y6J6	Methyltransf_11 domain-containing protein	NA
UHGV-0060785_5	eggNOG-mapper	469610.HMPREF0189_01151	Methyltransferase domain	NA
UHGV-0060785_5	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0060785_5	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0060785_5	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0060785_5	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0060785_6	PHROG	phrog_27524	NA	unknown function
UHGV-0060785_6	UniRef90	UniRef90_F3QJ89	Conserved domain protein	NA
UHGV-0060785_6	eggNOG-mapper	762966.HMPREF9439_00990	NA	NA
UHGV-0060785_9	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0060785_9	UniRef90	UniRef90_UPI001898EED4	siphovirus Gp157 family protein	NA
UHGV-0060785_9	eggNOG-mapper	1129146.H2BDF7_9CAUD	Siphovirus Gp157	NA
UHGV-0060785_9	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0060785_9	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0060785_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0060785_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0060785_10	UniRef90	UniRef90_F3QNN6	Single-stranded DNA-binding protein	NA
UHGV-0060785_10	eggNOG-mapper	469610.HMPREF0189_01394	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0060785_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0060785_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0060785_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0060785_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0060785_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0060785_11	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0060785_11	UniRef90	UniRef90_A0A6J5P0M3	Essential recombination function protein	NA
UHGV-0060785_11	eggNOG-mapper	1207076.ALAT01000105_gene1941	ERF superfamily	NA
UHGV-0060785_11	Pfam	PF04404	ERF superfamily	ERF
UHGV-0060785_11	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0060785_15	UniRef90	UniRef90_A0A3D3SJ30	Transcriptional regulator	NA
UHGV-0060785_16	UniRef90	UniRef90_UPI001C3E8E16	restriction endonuclease	NA
UHGV-0060785_16	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0060785_16	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0060785_16	Structural annotation	PF04471, MF_00722, NF002876, COG1787	NA	NA
UHGV-0060785_17	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0060785_17	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0060785_17	UniRef90	UniRef90_UPI0006D77E25	LexA family transcriptional regulator	NA
UHGV-0060785_17	eggNOG-mapper	1121921.KB898706_gene3022	Peptidase S24-like	NA
UHGV-0060785_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0060785_17	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0060785_17	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0060785_17	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0060785_18	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0060785_18	UniRef90	UniRef90_UPI0012D931AA	Cro/CI family transcriptional regulator	NA
UHGV-0060785_18	eggNOG-mapper	1038866.KB902768_gene5297	Nitrate reductase delta subunit	NA
UHGV-0060785_18	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0060785_18	COG	COG3381	Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation	NA
UHGV-0060785_18	Structural annotation	PF15943, NF041951, COG4197	NA	NA
UHGV-0060785_20	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0060785_20	UniRef90	UniRef90_UPI0012BB907D	helix-turn-helix domain-containing protein	NA
UHGV-0060785_20	eggNOG-mapper	469610.HMPREF0189_01095	NA	NA
UHGV-0060785_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0060785_20	Structural annotation	PF07106, MF_01177, TIGR01610, COG5529	NA	NA
UHGV-0060785_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0060785_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0060785_21	UniRef90	UniRef90_D9Y6E1	IstB-like ATP-binding protein	NA
UHGV-0060785_21	eggNOG-mapper	469610.HMPREF0189_01096	IstB-like ATP binding protein	NA
UHGV-0060785_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0060785_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0060785_21	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0060785_23	eggNOG-mapper	762966.HMPREF9439_01020	NA	NA
UHGV-0060785_24	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0060785_24	eggNOG-mapper	997346.HMPREF9374_1133	NA	NA
UHGV-0060785_24	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0060785_25	Structural annotation	PF04218	NA	NA
UHGV-0060785_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0060785_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0060785_26	UniRef90	UniRef90_UPI0012BCC981	terminase small subunit	NA
UHGV-0060785_26	eggNOG-mapper	641147.HMPREF9021_01785	Terminase small subunit	NA
UHGV-0060785_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0060785_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0060785_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0060785_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0060785_27	PHROG	phrog_5902	NA	unknown function
UHGV-0060785_27	UniRef90	UniRef90_UPI0012BCF9F6	terminase	NA
UHGV-0060785_27	eggNOG-mapper	665942.HMPREF1022_00139	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0060785_27	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0060785_27	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0060785_28	UniRef90	UniRef90_UPI0012BC2332	GNAT family N-acetyltransferase	NA
UHGV-0060785_28	eggNOG-mapper	1072685.IX83_07115	Acetyltransferase (GNAT) family	NA
UHGV-0060785_28	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0060785_28	COG	COG3375	Predicted acetyltransferase, GNAT superfamily	NA
UHGV-0060785_30	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0060785_30	UniRef90	UniRef90_UPI0012BC467D	portal protein	NA
UHGV-0060785_30	eggNOG-mapper	194699.PORTL_BPBPP	Bacteriophage head to tail connecting protein	NA
UHGV-0060785_30	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0060785_30	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0060785_31	PHROG	phrog_528	NA	unknown function
UHGV-0060785_32	PHROG	phrog_458	protease	other
UHGV-0060785_32	UniRef90	UniRef90_UPI0013EFD20D	protease	NA
UHGV-0060785_32	eggNOG-mapper	557598.LHK_01541	NA	NA
UHGV-0060785_33	PHROG	phrog_212	major head protein	head and packaging
UHGV-0060785_33	UniRef90	UniRef90_Q775C7	Bbp17	NA
UHGV-0060785_33	eggNOG-mapper	194699.Q775C7_BPBPP	viral capsid	NA
UHGV-0060785_33	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0060785_33	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0060785_34	PHROG	phrog_427	NA	unknown function
UHGV-0060785_34	UniRef90	UniRef90_Q775C8	Bbp16	NA
UHGV-0060785_34	eggNOG-mapper	194699.Q775C8_BPBPP	NA	NA
UHGV-0060785_34	Pfam	PF21190	Bbp16	Bbp16
UHGV-0060785_34	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0060785_35	PHROG	phrog_394	tail protein	tail
UHGV-0060785_35	eggNOG-mapper	557598.LHK_01545	NA	NA
UHGV-0060785_35	Structural annotation	PF17212	NA	NA
UHGV-0060785_36	PHROG	phrog_376	tail protein	tail
UHGV-0060785_36	UniRef90	UniRef90_A0A6F8VDG3	NA	NA
UHGV-0060785_36	eggNOG-mapper	557598.LHK_01546	NA	NA
UHGV-0060785_36	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0060785_37	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0060785_37	UniRef90	UniRef90_A0A6F8VD79	NA	NA
UHGV-0060785_37	eggNOG-mapper	557598.LHK_01551	NA	NA
UHGV-0060785_37	Structural annotation	PF07321, COG5034	NA	NA
UHGV-0060785_38	PHROG	phrog_873	endolysin	head and packaging
UHGV-0060785_38	eggNOG-mapper	526118.B4YQH3_9CAUD	lytic transglycosylase activity	NA
UHGV-0060785_38	Structural annotation	MF_04122	NA	NA
UHGV-0060785_39	PHROG	phrog_5143	NA	unknown function
UHGV-0060785_39	eggNOG-mapper	1415780.JPOG01000001_gene1744	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	NA
UHGV-0060785_39	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0060785_39	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0060785_40	PHROG	phrog_684	virion structural protein	head and packaging
UHGV-0060785_40	eggNOG-mapper	1157708.KB907450_gene5438	NA	NA
UHGV-0060785_41	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-0060785_41	PHROG	phrog_1640	tail protein	tail
UHGV-0060785_41	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0060785_41	Structural annotation	PF03906	NA	NA
UHGV-0060785_42	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0060785_42	eggNOG-mapper	563192.HMPREF0179_03429	domain, Protein	NA
UHGV-0060785_42	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0060785_42	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0060785_43	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0060785_43	UniRef90	UniRef90_UPI001F4F2EB0	phage tail assembly chaperone	NA
UHGV-0060785_43	eggNOG-mapper	469610.HMPREF0189_01210	Phage tail assembly chaperone protein	NA
UHGV-0060785_43	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0060785_43	Structural annotation	PF16778	NA	NA
UHGV-0060785_44	eggNOG-mapper	469610.HMPREF0189_02346	NA	NA
UHGV-0060785_44	Structural annotation	PF17065, TIGR03511, COG1843	NA	NA
UHGV-0060785_46	PHROG	phrog_199	holin	lysis
UHGV-0060785_46	UniRef90	UniRef90_UPI0012BCAC2D	phage holin family protein	NA
UHGV-0060785_46	eggNOG-mapper	762966.HMPREF9439_01063	Bacteriophage holin family	NA
UHGV-0060785_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0060785_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0060785_46	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0060785_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0060785_47	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0060785_47	PHROG	phrog_7	endolysin	lysis
UHGV-0060785_47	UniRef90	UniRef90_A0A5B3FP35	Lysozyme	NA
UHGV-0060785_47	eggNOG-mapper	469610.HMPREF0189_02350	Phage lysozyme	NA
UHGV-0060785_47	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0060785_47	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0060785_47	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0060785_49	UniRef90	UniRef90_A0A1N7K090	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0060785_49	eggNOG-mapper	469610.HMPREF0189_02290	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0060785_49	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0060785_49	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0060785_50	KOfam	K10009	tcyB, yecS; L-cystine transport system permease protein	NA
UHGV-0060785_50	PHROG	phrog_18202	NA	unknown function
UHGV-0060785_50	UniRef90	UniRef90_R6A3C9	ABC transporter permease protein	NA
UHGV-0060785_50	eggNOG-mapper	469610.HMPREF0189_01619	Binding-protein-dependent transport system inner membrane component	NA
UHGV-0060785_50	Pfam	PF00528	Binding-protein-dependent transport system inner membrane component	BPD_transp_1
UHGV-0060785_50	NCBIFam	TIGR01726.1	ABC transporter permease subunit	NA
UHGV-0060785_50	COG	COG0765	ABC-type amino acid transport system, permease component	NA