UHGV-0061016

Genome information

Genome length 40,549 bps

CDS count 66

Completeness 70.36% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0061016
vOTU ID	vOTU-025669
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_87122
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.89
Jumbo phage	No

Genome content
Genome length	40,549 bps
GC content	39.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	92.17%
Average CDS length	569.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0061016_1	PHROG	phrog_544	major head protein	head and packaging
UHGV-0061016_1	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-0061016_1	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-0061016_1	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0061016_1	Structural annotation	PF19821, TIGR04387	NA	NA
UHGV-0061016_2	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0061016_2	Structural annotation	PF21169	NA	NA
UHGV-0061016_3	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0061016_4	PHROG	phrog_4105	NA	unknown function
UHGV-0061016_4	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0061016_5	PHROG	phrog_443	holin	lysis
UHGV-0061016_5	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0061016_5	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0061016_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0061016_5	Structural annotation	PF16945	NA	NA
UHGV-0061016_6	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0061016_7	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0061016_7	AcrCatalog	cluster_24841	NA	NA
UHGV-0061016_8	Structural annotation	PF05657	NA	NA
UHGV-0061016_9	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0061016_9	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0061016_12	PHROG	phrog_14030	NA	unknown function
UHGV-0061016_12	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0061016_12	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0061016_12	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0061016_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0061016_13	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0061016_13	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0061016_13	COG	COG1511	NA	NA
UHGV-0061016_13	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0061016_14	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0061016_14	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0061016_14	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0061016_14	Structural annotation	PF02368, NF041740	NA	NA
UHGV-0061016_15	PHROG	phrog_806	NA	unknown function
UHGV-0061016_15	UniRef90	UniRef90_UPI001D08E833	NA	NA
UHGV-0061016_15	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-0061016_15	Pfam	PF11611	NA	DUF4352
UHGV-0061016_15	Structural annotation	PF11611, PF13828, MF_00791, NF003967, COG2967	NA	NA
UHGV-0061016_16	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0061016_16	UniRef90	UniRef90_A0A1I0BKG6	BRO family, N-terminal domain	NA
UHGV-0061016_16	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0061016_16	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0061016_16	COG	COG3617	Prophage antirepressor	NA
UHGV-0061016_16	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0061016_17	PHROG	phrog_1194	NA	unknown function
UHGV-0061016_17	Pfam	PF20458	NA	DUF6711
UHGV-0061016_17	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0061016_18	PHROG	phrog_18190	NA	unknown function
UHGV-0061016_18	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0061016_18	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0061016_18	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0061016_18	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0061016_19	PHROG	phrog_17196	kinase	other
UHGV-0061016_19	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0061016_19	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0061016_21	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0061016_22	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0061016_22	Structural annotation	NF040910	NA	NA
UHGV-0061016_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0061016_26	UniRef90	UniRef90_A0A416G2G1	XRE family transcriptional regulator	NA
UHGV-0061016_26	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0061016_26	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0061016_26	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0061016_26	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0061016_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0061016_27	UniRef90	UniRef90_UPI001D081A91	helix-turn-helix transcriptional regulator	NA
UHGV-0061016_27	eggNOG-mapper	1203606.HMPREF1526_00303	Helix-turn-helix XRE-family like proteins	NA
UHGV-0061016_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0061016_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0061016_27	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0061016_29	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0061016_29	UniRef90	UniRef90_UPI001D00AF42	ORF6N domain-containing protein	NA
UHGV-0061016_29	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0061016_29	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0061016_29	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0061016_29	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0061016_34	PHROG	phrog_26861	NA	unknown function
UHGV-0061016_34	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0061016_34	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0061016_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0061016_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0061016_34	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0061016_35	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0061016_35	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0061016_35	UniRef90	UniRef90_A0A413Z5U6	AAA_23 domain-containing protein	NA
UHGV-0061016_35	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0061016_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0061016_35	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0061016_36	PHROG	phrog_19610	NA	unknown function
UHGV-0061016_38	PHROG	phrog_2164	NA	unknown function
UHGV-0061016_38	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0061016_40	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0061016_40	UniRef90	UniRef90_UPI00189B4EB8	recombinase RecT	NA
UHGV-0061016_40	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0061016_40	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0061016_41	PHROG	phrog_25456	NA	unknown function
UHGV-0061016_42	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0061016_42	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0061016_42	UniRef90	UniRef90_A0A843HLL6	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0061016_42	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0061016_42	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0061016_42	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0061016_42	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0061016_43	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0061016_43	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0061016_43	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0061016_43	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0061016_43	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0061016_43	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0061016_43	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0061016_44	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0061016_44	eggNOG-mapper	1232453.BAIF02000057_gene1139	NA	NA
UHGV-0061016_45	PHROG	phrog_1029	NA	unknown function
UHGV-0061016_45	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0061016_45	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0061016_45	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0061016_47	PHROG	phrog_19106	NA	unknown function
UHGV-0061016_47	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0061016_47	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0061016_47	Structural annotation	TIGR01453	NA	NA
UHGV-0061016_48	PHROG	phrog_11769	NA	unknown function
UHGV-0061016_48	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0061016_48	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0061016_48	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0061016_48	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0061016_48	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0061016_49	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0061016_49	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0061016_49	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0061016_49	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0061016_49	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0061016_49	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0061016_49	COG	COG0305	Replicative DNA helicase	NA
UHGV-0061016_49	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0061016_53	PHROG	phrog_22292	NA	unknown function
UHGV-0061016_54	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0061016_54	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0061016_55	UniRef90	UniRef90_UPI001D046CFA	NA	NA
UHGV-0061016_55	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0061016_57	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0061016_58	PHROG	phrog_20593	NA	unknown function
UHGV-0061016_59	PHROG	phrog_874	NA	unknown function
UHGV-0061016_59	UniRef90	UniRef90_UPI00117743A2	ASCH domain-containing protein	NA
UHGV-0061016_59	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0061016_59	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0061016_61	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0061016_63	Structural annotation	PF17388	NA	NA
UHGV-0061016_64	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0061016_64	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0061016_64	AcrCatalog	cluster_47493	NA	NA
UHGV-0061016_64	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0061016_65	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0061016_65	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0061016_65	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0061016_66	KOfam	K14059	int; integrase	NA
UHGV-0061016_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0061016_66	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0061016_66	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0061016_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0061016_66	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0061016_66	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA