UHGV-0061028

Genome information

Genome length 27,660 bps

CDS count 43

Completeness 71.16% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0061028
vOTU ID	vOTU-041404
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_103790
BioSample	SAMEA2467030
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.79
Jumbo phage	No

Genome content
Genome length	27,660 bps
GC content	40.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.11%
Average CDS length	599.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0061028_1	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0061028_1	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0061028_2	PHROG	phrog_10	major head protein	head and packaging
UHGV-0061028_2	UniRef90	UniRef90_A6BER6	Putative phage capsid family	NA
UHGV-0061028_2	eggNOG-mapper	411462.DORLON_00786	COG NOG20168 non supervised orthologous group	NA
UHGV-0061028_2	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0061028_2	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0061028_2	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0061028_2	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0061028_3	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0061028_3	eggNOG-mapper	411462.DORLON_00787	NA	NA
UHGV-0061028_3	AcrCatalog	cluster_74817	NA	NA
UHGV-0061028_3	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0061028_4	KOfam	K07584	NA	NA
UHGV-0061028_4	PHROG	phrog_4478	peptidase	other
UHGV-0061028_4	UniRef90	UniRef90_A0A173TUJ7	Predicted ribosomal protein	NA
UHGV-0061028_4	eggNOG-mapper	411462.DORLON_00788	Pfam:Peptidase_C108	NA
UHGV-0061028_4	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0061028_4	COG	COG2868	NA	NA
UHGV-0061028_4	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0061028_5	PHROG	phrog_3711	NA	unknown function
UHGV-0061028_5	eggNOG-mapper	411462.DORLON_00789	NA	NA
UHGV-0061028_6	PHROG	phrog_21033	NA	unknown function
UHGV-0061028_6	UniRef90	UniRef90_A0A173VG74	Phage minor capsid protein 2	NA
UHGV-0061028_6	eggNOG-mapper	742765.HMPREF9457_02121	NA	NA
UHGV-0061028_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0061028_6	COG	COG2369	NA	NA
UHGV-0061028_6	Structural annotation	PF06152	NA	NA
UHGV-0061028_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-0061028_7	UniRef90	UniRef90_A6BES5	Phage minor capsid protein	NA
UHGV-0061028_7	eggNOG-mapper	411462.DORLON_00795	COG NOG25118 non supervised orthologous group	NA
UHGV-0061028_7	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0061028_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0061028_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0061028_8	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0061028_8	UniRef90	UniRef90_B0G3C9	Phage terminase, large subunit, PBSX family	NA
UHGV-0061028_8	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0061028_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0061028_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0061028_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0061028_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0061028_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0061028_9	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0061028_9	UniRef90	UniRef90_A0A391P905	DNA-binding protein	NA
UHGV-0061028_9	eggNOG-mapper	411461.DORFOR_00751	DNA packaging	NA
UHGV-0061028_9	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0061028_9	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0061028_9	COG	COG5484	NA	NA
UHGV-0061028_9	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0061028_11	Structural annotation	PF19865	NA	NA
UHGV-0061028_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0061028_13	UniRef90	UniRef90_A0A6L8RVY0	Sigma70_r4 domain-containing protein	NA
UHGV-0061028_13	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0061028_13	Pfam	PF07374	NA	DUF1492
UHGV-0061028_13	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0061028_13	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0061028_16	eggNOG-mapper	411462.DORLON_00805	NA	NA
UHGV-0061028_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0061028_17	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0061028_17	UniRef90	UniRef90_A6BET6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0061028_17	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0061028_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0061028_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0061028_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0061028_18	PHROG	phrog_16687	NA	unknown function
UHGV-0061028_19	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0061028_19	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0061028_19	UniRef90	UniRef90_A6BET8	Primase C terminal 2 (PriCT-2)	NA
UHGV-0061028_19	eggNOG-mapper	411462.DORLON_00808	Primase C terminal 2 (PriCT-2)	NA
UHGV-0061028_19	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0061028_19	Pfam	PF13481	AAA domain	AAA_25
UHGV-0061028_19	COG	COG3598	RecA-family ATPase	NA
UHGV-0061028_19	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0061028_20	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0061028_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0061028_20	UniRef90	UniRef90_R6SHV8	Helicase C-terminal domain protein	NA
UHGV-0061028_20	eggNOG-mapper	411462.DORLON_00809	helicase superfamily c-terminal domain	NA
UHGV-0061028_20	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0061028_20	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0061028_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0061028_20	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0061028_20	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0061028_21	PHROG	phrog_2698	NA	unknown function
UHGV-0061028_21	UniRef90	UniRef90_D9R8Z5	NA	NA
UHGV-0061028_21	eggNOG-mapper	411462.DORLON_00810	NA	NA
UHGV-0061028_22	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0061028_22	UniRef90	UniRef90_UPI001E57C8F5	ATP-binding protein	NA
UHGV-0061028_22	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-0061028_22	Pfam	PF13479	AAA domain	AAA_24
UHGV-0061028_22	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0061028_23	PHROG	phrog_1499	NA	unknown function
UHGV-0061028_23	UniRef90	UniRef90_UPI001898ADB4	AAA family ATPase	NA
UHGV-0061028_23	eggNOG-mapper	411462.DORLON_00812	AAA ATPase domain	NA
UHGV-0061028_23	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0061028_24	PHROG	phrog_1499	NA	unknown function
UHGV-0061028_24	UniRef90	UniRef90_A0A533SRG1	Chromosome segregation protein SMC (Fragment)	NA
UHGV-0061028_24	eggNOG-mapper	411462.DORLON_00812	AAA ATPase domain	NA
UHGV-0061028_24	Pfam	PF13476	AAA domain	AAA_23
UHGV-0061028_24	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0061028_25	PHROG	phrog_3777	NA	unknown function
UHGV-0061028_25	UniRef90	UniRef90_UPI00156DC22E	NA	NA
UHGV-0061028_25	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0061028_25	Pfam	PF12957	NA	DUF3846
UHGV-0061028_25	Structural annotation	PF12957	NA	NA
UHGV-0061028_26	eggNOG-mapper	411462.DORLON_00814	NA	NA
UHGV-0061028_28	PHROG	phrog_32168	NA	unknown function
UHGV-0061028_34	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0061028_34	UniRef90	UniRef90_A0A3E5EKH6	Transcriptional regulator	NA
UHGV-0061028_34	eggNOG-mapper	411470.RUMGNA_03232	NA	NA
UHGV-0061028_34	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0061028_34	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0061028_34	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0061028_34	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0061028_35	UniRef90	UniRef90_A0A318XPA7	Cro/C1-type helix-turn-helix DNA-binding protein	NA
UHGV-0061028_35	eggNOG-mapper	864563.HMPREF9166_1836	NA	NA
UHGV-0061028_35	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0061028_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0061028_36	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0061028_36	UniRef90	UniRef90_F7JQG5	HTH cro/C1-type domain-containing protein	NA
UHGV-0061028_36	eggNOG-mapper	1123511.KB905868_gene209	Helix-turn-helix XRE-family like proteins	NA
UHGV-0061028_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0061028_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0061028_37	PHROG	phrog_87	metallo-protease	other
UHGV-0061028_37	UniRef90	UniRef90_UPI001570E616	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0061028_37	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-0061028_37	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0061028_37	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0061028_37	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0061028_38	PHROG	phrog_9418	NA	unknown function
UHGV-0061028_38	eggNOG-mapper	411462.DORLON_00822	NA	NA
UHGV-0061028_38	Structural annotation	PF10233	NA	NA
UHGV-0061028_39	PHROG	phrog_10226	NA	unknown function
UHGV-0061028_39	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-0061028_39	Structural annotation	COG4127	NA	NA
UHGV-0061028_41	PHROG	phrog_16228	NA	unknown function
UHGV-0061028_41	UniRef90	UniRef90_A0A173VH75	Uma2 family endonuclease	NA
UHGV-0061028_41	eggNOG-mapper	742765.HMPREF9457_02091	Putative restriction endonuclease	NA
UHGV-0061028_41	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0061028_41	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0061028_41	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0061028_42	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0061028_42	PHROG	phrog_95	integrase	integration and excision
UHGV-0061028_42	UniRef90	UniRef90_A6BEV3	Resolvase, N-terminal domain protein	NA
UHGV-0061028_42	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0061028_42	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0061028_42	Pfam	PF07508	Recombinase	Recombinase
UHGV-0061028_42	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0061028_42	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0061028_42	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0061028_43	PHROG	phrog_23452	NA	unknown function
UHGV-0061028_43	UniRef90	UniRef90_A0A174JNC4	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-0061028_43	eggNOG-mapper	1280698.AUJS01000010_gene819	Putative peptidoglycan binding domain	NA
UHGV-0061028_43	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0061028_43	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0061028_43	Structural annotation	PF01471, COG3409	NA	NA