UHGV-0061231

Genome information

Genome length 34,899 bps

CDS count 50

Completeness 84.78% (medium-quality)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-0061231
vOTU ID	vOTU-038542
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_92526
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.51
Jumbo phage	No

Genome content
Genome length	34,899 bps
GC content	45.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.11%
Average CDS length	632.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0061231_2	PHROG	phrog_9804	NA	unknown function
UHGV-0061231_2	UniRef90	UniRef90_A0A316S7J6	Inhibitor_G39P domain-containing protein	NA
UHGV-0061231_2	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-0061231_2	Structural annotation	PF11417	NA	NA
UHGV-0061231_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0061231_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0061231_3	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0061231_3	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0061231_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0061231_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0061231_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0061231_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0061231_3	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0061231_5	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0061231_5	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0061231_5	eggNOG-mapper	1511.CLOST_1536	NA	NA
UHGV-0061231_5	Pfam	PF06356	NA	DUF1064
UHGV-0061231_5	Structural annotation	PF06356	NA	NA
UHGV-0061231_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0061231_7	UniRef90	UniRef90_A0A348ZBT0	RNA_pol_sigma70 domain-containing protein	NA
UHGV-0061231_7	eggNOG-mapper	908340.HMPREF9406_0156	sigma factor activity	NA
UHGV-0061231_7	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0061231_7	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0061231_7	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0061231_10	UniRef90	UniRef90_R6X5I6	PhageMetallopep domain-containing protein	NA
UHGV-0061231_10	eggNOG-mapper	926561.KB900624_gene2638	NA	NA
UHGV-0061231_10	Pfam	PF18894	Putative phage metallopeptidase	PhageMetallopep
UHGV-0061231_10	Structural annotation	PF18894, COG4900	NA	NA
UHGV-0061231_11	eggNOG-mapper	1203554.HMPREF1476_00247	NA	NA
UHGV-0061231_12	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0061231_12	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0061231_12	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0061231_12	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0061231_12	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0061231_12	COG	COG5410	NA	NA
UHGV-0061231_12	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0061231_13	PHROG	phrog_145	portal protein	head and packaging
UHGV-0061231_13	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0061231_13	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0061231_13	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0061231_14	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0061231_14	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0061231_14	eggNOG-mapper	1232428.CAVO010000021_gene805	NA	NA
UHGV-0061231_14	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0061231_17	eggNOG-mapper	1280706.AUJE01000003_gene2260	NA	NA
UHGV-0061231_17	Structural annotation	PF06810	NA	NA
UHGV-0061231_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0061231_18	UniRef90	UniRef90_R6WWZ7	Gp7	NA
UHGV-0061231_18	eggNOG-mapper	1352230.S6AVV3_9CAUD	NA	NA
UHGV-0061231_18	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0061231_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0061231_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0061231_19	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-0061231_19	eggNOG-mapper	1000569.HMPREF1040_0194	Phage virion morphogenesis	NA
UHGV-0061231_19	COG	COG5005	NA	NA
UHGV-0061231_19	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0061231_20	eggNOG-mapper	1111454.HMPREF1250_1049	NA	NA
UHGV-0061231_21	UniRef90	UniRef90_R6WK09	Conserved domain protein	NA
UHGV-0061231_21	eggNOG-mapper	1280706.AUJE01000003_gene2256	NA	NA
UHGV-0061231_21	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0061231_22	PHROG	phrog_1407	major tail protein	tail
UHGV-0061231_22	UniRef90	UniRef90_R6X5G0	Phage major tail protein TP901-1 family	NA
UHGV-0061231_22	eggNOG-mapper	568816.Acin_1911	Phage tail tube protein	NA
UHGV-0061231_22	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0061231_22	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0061231_22	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0061231_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0061231_23	eggNOG-mapper	1123288.SOV_2c03540	NA	NA
UHGV-0061231_23	Structural annotation	PF19591	NA	NA
UHGV-0061231_25	PHROG	phrog_12798	NA	unknown function
UHGV-0061231_25	UniRef90	UniRef90_R6WQ18	Tape measure domain-containing protein	NA
UHGV-0061231_25	eggNOG-mapper	2754.EH55_13250	tape measure	NA
UHGV-0061231_25	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0061231_25	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0061231_25	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0061231_25	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0061231_26	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0061231_26	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0061231_26	Pfam	PF09343	NA	DUF2460
UHGV-0061231_26	COG	COG5448	NA	NA
UHGV-0061231_26	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0061231_27	UniRef90	UniRef90_R6WK00	NA	NA
UHGV-0061231_27	eggNOG-mapper	436717.AOLE_14930	NA	NA
UHGV-0061231_27	Pfam	PF09931	NA	DUF2163
UHGV-0061231_27	COG	COG5449	NA	NA
UHGV-0061231_27	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0061231_28	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0061231_28	PHROG	phrog_329	minor tail protein	tail
UHGV-0061231_28	UniRef90	UniRef90_R6XZ04	Cell wall-associated hydrolase	NA
UHGV-0061231_28	eggNOG-mapper	592028.GCWU000321_01389	NlpC/P60 family	NA
UHGV-0061231_28	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0061231_28	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0061231_28	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0061231_29	KOfam	K22656	IGSF9B; immunoglobulin superfamily member 9B	NA
UHGV-0061231_29	PHROG	phrog_1101	tail protein	tail
UHGV-0061231_29	UniRef90	UniRef90_R6X5E9	Phage-tail_3 domain-containing protein	NA
UHGV-0061231_29	eggNOG-mapper	592028.GCWU000321_01390	Putative phage tail protein	NA
UHGV-0061231_29	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0061231_29	COG	COG1511	NA	NA
UHGV-0061231_29	Structural annotation	PF13550, PF02010, MF_04116, NF040662, NF040520, COG4733	NA	NA
UHGV-0061231_31	PHROG	phrog_6061	NA	unknown function
UHGV-0061231_32	PHROG	phrog_1084	NA	unknown function
UHGV-0061231_32	eggNOG-mapper	665956.HMPREF1032_00696	NA	NA
UHGV-0061231_32	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0061231_33	PHROG	phrog_31538	NA	unknown function
UHGV-0061231_33	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0061231_34	PHROG	phrog_13589	NA	unknown function
UHGV-0061231_34	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0061231_35	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0061231_36	Structural annotation	PF16116	NA	NA
UHGV-0061231_37	PHROG	phrog_2837	tail protein	tail
UHGV-0061231_37	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0061231_37	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0061231_37	Pfam	PF14301	NA	DUF4376
UHGV-0061231_37	Structural annotation	PF14301	NA	NA
UHGV-0061231_38	UniRef90	UniRef90_R6X5E0	Holin domain protein	NA
UHGV-0061231_38	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-0061231_38	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0061231_38	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0061231_39	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0061231_39	PHROG	phrog_894	endolysin	lysis
UHGV-0061231_39	UniRef90	UniRef90_A0A1Q6R3X6	Peptidase_M15_3 domain-containing protein	NA
UHGV-0061231_39	eggNOG-mapper	868595.Desca_1639	Peptidase M15A	NA
UHGV-0061231_39	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0061231_39	COG	COG3108	NA	NA
UHGV-0061231_39	Structural annotation	PF08291, NF000086, COG3108	NA	NA
UHGV-0061231_41	KOfam	K06993	K06993; ribonuclease H-related protein	NA
UHGV-0061231_41	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0061231_41	UniRef90	UniRef90_E4LB45	RNase H type-1 domain-containing protein	NA
UHGV-0061231_41	eggNOG-mapper	879309.HMPREF9199_0683	RNase H	NA
UHGV-0061231_41	Pfam	PF01693	Caulimovirus viroplasmin	Cauli_VI
UHGV-0061231_41	Pfam	PF00075	RNase H	RNase_H
UHGV-0061231_41	Pfam	PF15935	RNase LS, bacterial toxin	RnlA_toxin
UHGV-0061231_41	Pfam	PF19034	RNase LS, bacterial toxin DBD domain	RnlA-toxin_DBD
UHGV-0061231_41	COG	COG3341	Ribonuclease HI-related protein, contains viroplasmin and RNaseH domains	NA
UHGV-0061231_41	Structural annotation	PF01693, PF00075, PF15935, PF19034, MF_00042, NF041175, COG0328	NA	NA
UHGV-0061231_42	UniRef90	UniRef90_A0A1G9UH15	Antitoxin to toxin RNase LS or RnlA	NA
UHGV-0061231_42	eggNOG-mapper	1501230.ET33_03760	Antitoxin to bacterial toxin RNase LS or RnlA	NA
UHGV-0061231_42	Pfam	PF15933	Antitoxin to bacterial toxin RNase LS or RnlA	RnlB_antitoxin
UHGV-0061231_42	Structural annotation	PF15933	NA	NA
UHGV-0061231_43	eggNOG-mapper	665956.HMPREF1032_02316	NA	NA
UHGV-0061231_44	eggNOG-mapper	665956.HMPREF1032_02316	NA	NA
UHGV-0061231_45	UniRef90	UniRef90_A0A0V8QIY8	DNA-binding protein	NA
UHGV-0061231_45	eggNOG-mapper	1408437.JNJN01000062_gene394	Helix-turn-helix domain	NA
UHGV-0061231_45	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0061231_45	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0061231_46	UniRef90	UniRef90_A0A0V8QJL2	Molecular chaperone	NA
UHGV-0061231_46	eggNOG-mapper	411467.BACCAP_02485	NA	NA
UHGV-0061231_46	AcrCatalog	cluster_1994	NA	NA
UHGV-0061231_47	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0061231_47	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0061231_47	UniRef90	UniRef90_A0A096BB78	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0061231_47	eggNOG-mapper	742738.HMPREF9460_01133	Resolvase, N terminal domain	NA
UHGV-0061231_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0061231_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0061231_47	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0061231_48	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0061231_48	PHROG	phrog_11371	NA	unknown function
UHGV-0061231_48	UniRef90	UniRef90_A0A3A6K1X8	SAM-dependent DNA methyltransferase	NA
UHGV-0061231_48	eggNOG-mapper	742738.HMPREF9460_01134	Type II restriction enzyme, methylase subunits	NA
UHGV-0061231_48	Pfam	PF20473	MmeI, DNA-methyltransferase domain	MmeI_Mtase
UHGV-0061231_48	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0061231_48	Structural annotation	PF20473, MF_03188	NA	NA
UHGV-0061231_49	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0061231_49	UniRef90	UniRef90_A0A096CNH0	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0061231_49	eggNOG-mapper	742738.HMPREF9460_01135	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0061231_49	PADLOC	REase_MTase_IIG_00031	Type IIG restriction enzyme-methyltransferase	RM
UHGV-0061231_49	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0061231_49	Pfam	PF07669	Eco57I restriction-modification methylase	Eco57I
UHGV-0061231_49	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0061231_49	Structural annotation	PF07669, MF_00607, TIGR02987, COG0286	NA	NA
UHGV-0061231_50	UniRef90	UniRef90_A0A7X6VDI0	GIY-YIG nuclease family protein (Fragment)	NA
UHGV-0061231_50	eggNOG-mapper	742738.HMPREF9460_01136	T5orf172	NA
UHGV-0061231_50	COG	COG4096	Type I site-specific restriction endonuclease, part of a restriction-modification system	NA