UHGV-0061357

Genome information

Genome length 45,809 bps

CDS count 74

Completeness 99.90% (high-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0061357
vOTU ID	vOTU-060731
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_97894
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.62
Jumbo phage	No

Genome content
Genome length	45,809 bps
GC content	41.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	92.22%
Average CDS length	574.42 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0061357_1	KOfam	K14059	int; integrase	NA
UHGV-0061357_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0061357_1	UniRef90	UniRef90_D4LPN8	Phage integrase family	NA
UHGV-0061357_1	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0061357_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0061357_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0061357_1	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0061357_2	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0061357_2	PHROG	phrog_19856	NA	unknown function
UHGV-0061357_2	UniRef90	UniRef90_A0A416IWX8	Restriction endonuclease	NA
UHGV-0061357_2	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0061357_2	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0061357_2	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0061357_2	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0061357_2	Structural annotation	PF04471, NF002876, COG1787	NA	NA
UHGV-0061357_3	Structural annotation	PF02701	NA	NA
UHGV-0061357_4	UniRef90	UniRef90_A0A416GYG1	NA	NA
UHGV-0061357_4	eggNOG-mapper	1122917.KB899663_gene2489	NA	NA
UHGV-0061357_7	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0061357_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0061357_7	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0061357_7	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0061357_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0061357_7	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0061357_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0061357_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0061357_8	Structural annotation	COG1321	NA	NA
UHGV-0061357_11	PHROG	phrog_6058	NA	unknown function
UHGV-0061357_11	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0061357_11	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0061357_12	AcrCatalog	cluster_17974	NA	NA
UHGV-0061357_16	Structural annotation	NF011879	NA	NA
UHGV-0061357_17	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0061357_18	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0061357_18	UniRef90	UniRef90_A0A8F2J9K2	ATP-binding protein	NA
UHGV-0061357_18	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0061357_18	Pfam	PF13479	AAA domain	AAA_24
UHGV-0061357_18	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0061357_20	PHROG	phrog_18107	NA	unknown function
UHGV-0061357_20	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0061357_20	Structural annotation	PF05037	NA	NA
UHGV-0061357_21	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0061357_21	UniRef90	UniRef90_A0A173R9N6	ERCC4 domain-containing protein	NA
UHGV-0061357_21	eggNOG-mapper	476272.RUMHYD_02832	ERCC4 domain	NA
UHGV-0061357_21	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0061357_21	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0061357_21	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0061357_22	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0061357_22	UniRef90	UniRef90_UPI001655DAE1	bifunctional DNA primase/polymerase	NA
UHGV-0061357_22	eggNOG-mapper	500632.CLONEX_03568	Virulence-associated protein E	NA
UHGV-0061357_22	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0061357_22	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0061357_22	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0061357_22	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0061357_22	Structural annotation	PF05272, PF09250, PF08708, MF_00016, NF011296, COG5545	NA	NA
UHGV-0061357_24	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0061357_24	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0061357_27	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0061357_27	UniRef90	UniRef90_UPI001C0EC2D9	radical SAM protein	NA
UHGV-0061357_27	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0061357_27	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0061357_27	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0061357_31	PHROG	phrog_4601	NA	unknown function
UHGV-0061357_32	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-0061357_32	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0061357_33	PHROG	phrog_15198	NA	unknown function
UHGV-0061357_33	UniRef90	UniRef90_A0A395XB56	NA	NA
UHGV-0061357_33	Pfam	PF04448	NA	DUF551
UHGV-0061357_33	Structural annotation	NF041588	NA	NA
UHGV-0061357_34	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0061357_34	AcrCatalog	cluster_11670	NA	NA
UHGV-0061357_36	PHROG	phrog_24490	NA	unknown function
UHGV-0061357_36	eggNOG-mapper	1235793.C809_02212	NA	NA
UHGV-0061357_37	PHROG	phrog_20593	NA	unknown function
UHGV-0061357_38	PHROG	phrog_8684	NA	unknown function
UHGV-0061357_38	UniRef90	UniRef90_A0A395X9H4	YopX domain-containing protein	NA
UHGV-0061357_38	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0061357_38	Pfam	PF09643	YopX protein	YopX
UHGV-0061357_38	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0061357_41	Structural annotation	PF17400	NA	NA
UHGV-0061357_42	Structural annotation	PF09038	NA	NA
UHGV-0061357_44	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0061357_44	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0061357_44	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0061357_44	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0061357_44	Structural annotation	PF16677	NA	NA
UHGV-0061357_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0061357_45	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0061357_45	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-0061357_45	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0061357_45	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0061357_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0061357_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0061357_45	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0061357_46	PHROG	phrog_533	portal protein	head and packaging
UHGV-0061357_46	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0061357_46	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0061357_46	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0061357_49	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0061357_49	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-0061357_49	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0061357_49	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0061357_49	COG	COG2369	NA	NA
UHGV-0061357_49	Structural annotation	PF06152	NA	NA
UHGV-0061357_50	PHROG	phrog_3754	NA	unknown function
UHGV-0061357_50	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0061357_51	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0061357_51	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0061357_52	PHROG	phrog_21718	NA	unknown function
UHGV-0061357_52	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0061357_53	PHROG	phrog_22984	NA	unknown function
UHGV-0061357_54	PHROG	phrog_16490	NA	unknown function
UHGV-0061357_54	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0061357_55	PHROG	phrog_20016	NA	unknown function
UHGV-0061357_55	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0061357_55	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0061357_55	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0061357_56	PHROG	phrog_28802	NA	unknown function
UHGV-0061357_56	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0061357_58	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0061357_58	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0061357_58	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0061357_58	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0061357_59	PHROG	phrog_544	major head protein	head and packaging
UHGV-0061357_59	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0061357_59	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0061357_59	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0061357_59	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0061357_60	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0061357_60	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0061357_62	PHROG	phrog_1129	holin	lysis
UHGV-0061357_62	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0061357_62	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0061357_62	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0061357_62	Structural annotation	PF06946	NA	NA
UHGV-0061357_63	PHROG	phrog_8680	NA	unknown function
UHGV-0061357_63	UniRef90	UniRef90_A0A412EKN2	NA	NA
UHGV-0061357_63	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0061357_63	Pfam	PF14386	NA	DUF4417
UHGV-0061357_63	Structural annotation	PF14386	NA	NA
UHGV-0061357_65	PHROG	phrog_3366	NA	unknown function
UHGV-0061357_65	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0061357_65	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0061357_66	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0061357_66	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0061357_66	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0061357_66	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0061357_66	Structural annotation	PF11114	NA	NA
UHGV-0061357_67	PHROG	phrog_3266	tail completion	connector
UHGV-0061357_67	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0061357_67	Structural annotation	PF12691	NA	NA
UHGV-0061357_68	PHROG	phrog_3099	NA	unknown function
UHGV-0061357_68	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0061357_68	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0061357_69	PHROG	phrog_11299	NA	unknown function
UHGV-0061357_69	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0061357_69	Structural annotation	PF10666	NA	NA
UHGV-0061357_70	PHROG	phrog_706	NA	unknown function
UHGV-0061357_70	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0061357_70	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0061357_70	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0061357_70	Structural annotation	PF06854	NA	NA
UHGV-0061357_71	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0061357_71	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0061357_71	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0061357_71	COG	COG1511	NA	NA
UHGV-0061357_71	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0061357_72	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0061357_73	PHROG	phrog_6616	tail protein	tail
UHGV-0061357_73	UniRef90	UniRef90_UPI001D0E203F	tail fiber domain-containing protein	NA
UHGV-0061357_73	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0061357_73	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0061357_73	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0061357_74	KOfam	K07273	acm; lysozyme	NA
UHGV-0061357_74	PHROG	phrog_6745	endolysin	lysis
UHGV-0061357_74	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0061357_74	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0061357_74	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0061357_74	Pfam	PF05257	CHAP domain	CHAP
UHGV-0061357_74	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0061357_74	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0061357_74	Structural annotation	PF01183, PF18342, PF14603, NF040678, TIGR04303, COG3757, COG3807	NA	NA