UHGV-0061384

Genome information

Genome length 13,444 bps

CDS count 19

Completeness 98.32% (high-quality)

geNomad score 0.9719

Prediction confidence Confident

Genome information
Genome ID	UHGV-0061384
vOTU ID	vOTU-014223
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_77902
BioSample	SAMEA2338696
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9719
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.28
Jumbo phage	No

Genome content
Genome length	13,444 bps
GC content	41.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	93.45%
Average CDS length	666.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0061384_4	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0061384_4	Structural annotation	PF12708, PF21621, TIGR03808, COG5434	NA	NA
UHGV-0061384_6	PHROG	phrog_2038	upper collar connector	connector
UHGV-0061384_6	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0061384_6	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0061384_6	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0061384_6	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0061384_7	PHROG	phrog_14030	NA	unknown function
UHGV-0061384_7	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-0061384_7	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0061384_7	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0061384_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0061384_7	Structural annotation	PF18013	NA	NA
UHGV-0061384_8	PHROG	phrog_7698	endolysin	lysis
UHGV-0061384_8	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0061384_8	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0061384_8	Structural annotation	PF08230	NA	NA
UHGV-0061384_9	Structural annotation	PF20934	NA	NA
UHGV-0061384_10	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0061384_13	PHROG	phrog_2150	terminase	head and packaging
UHGV-0061384_13	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0061384_13	eggNOG-mapper	977801.F0PIJ2_9VIRU	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0061384_13	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0061384_13	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0061384_14	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0061384_14	Structural annotation	PF17427	NA	NA
UHGV-0061384_15	Structural annotation	PF14902	NA	NA
UHGV-0061384_17	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0061384_17	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0061384_17	UniRef90	UniRef90_A0A843GHP1	DNA-directed DNA polymerase	NA
UHGV-0061384_17	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0061384_17	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0061384_17	Structural annotation	PF03175, MF_04055, COG0417	NA	NA