UHGV-0061505

Genome information

Genome length 29,104 bps

CDS count 42

Completeness 99.41% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0061505
vOTU ID	vOTU-076104
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_96880
BioSample	SAMEA2466917
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.41% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.3
Jumbo phage	No

Genome content
Genome length	29,104 bps
GC content	41.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.68%
Average CDS length	652.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0061505_1	PHROG	phrog_24764	NA	unknown function
UHGV-0061505_1	UniRef90	UniRef90_A0A4P8XYY8	TnpV protein	NA
UHGV-0061505_1	eggNOG-mapper	428125.CLOLEP_03218	NA	NA
UHGV-0061505_1	Pfam	PF14198	Transposon-encoded protein TnpV	TnpV
UHGV-0061505_2	KOfam	K14059	int; integrase	NA
UHGV-0061505_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0061505_2	UniRef90	UniRef90_A0A373XME4	Site-specific integrase	NA
UHGV-0061505_2	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0061505_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0061505_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0061505_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0061505_3	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0061505_4	PHROG	phrog_87	metallo-protease	other
UHGV-0061505_4	UniRef90	UniRef90_A0A7C7D013	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0061505_4	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-0061505_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0061505_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0061505_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0061505_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0061505_5	UniRef90	UniRef90_UPI00164A97F3	helix-turn-helix domain-containing protein	NA
UHGV-0061505_5	eggNOG-mapper	246199.CUS_5582	sequence-specific DNA binding	NA
UHGV-0061505_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0061505_5	COG	COG1426	NA	NA
UHGV-0061505_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0061505_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0061505_6	UniRef90	UniRef90_UPI0001E081F8	helix-turn-helix domain-containing protein	NA
UHGV-0061505_6	eggNOG-mapper	445335.CBN_3090	Helix-turn-helix domain	NA
UHGV-0061505_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0061505_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0061505_6	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0061505_9	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0061505_9	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-0061505_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0061505_9	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0061505_9	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0061505_9	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0061505_11	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0061505_11	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0061505_11	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0061505_11	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0061505_11	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0061505_11	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0061505_12	PHROG	phrog_15609	NA	unknown function
UHGV-0061505_12	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0061505_12	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0061505_12	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0061505_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0061505_13	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-0061505_13	eggNOG-mapper	1027396.LMOSA_21290	Siphovirus Gp157	NA
UHGV-0061505_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0061505_13	Structural annotation	PF05565	NA	NA
UHGV-0061505_14	PHROG	phrog_1366	NA	unknown function
UHGV-0061505_14	UniRef90	UniRef90_R6S946	AAA domain-containing protein	NA
UHGV-0061505_14	eggNOG-mapper	1410670.JHXF01000015_gene2269	AAA domain	NA
UHGV-0061505_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0061505_14	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0061505_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0061505_15	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0061505_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0061505_15	UniRef90	UniRef90_A0A374N1T8	Helicase	NA
UHGV-0061505_15	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0061505_15	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0061505_15	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0061505_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0061505_15	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0061505_15	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0061505_16	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0061505_16	UniRef90	UniRef90_A0A374N329	VRR-NUC domain-containing protein	NA
UHGV-0061505_16	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0061505_16	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0061505_16	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0061505_17	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0061505_17	UniRef90	UniRef90_A0A374ND86	NA	NA
UHGV-0061505_17	eggNOG-mapper	1410670.JHXF01000015_gene2272	NA	NA
UHGV-0061505_17	Pfam	PF05037	NA	DUF669
UHGV-0061505_17	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0061505_18	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0061505_18	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0061505_18	UniRef90	UniRef90_A0A2N0ULU7	SF3 helicase domain-containing protein	NA
UHGV-0061505_18	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0061505_18	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0061505_18	Pfam	PF19263	NA	DUF5906
UHGV-0061505_18	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0061505_18	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0061505_18	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0061505_18	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0061505_20	PHROG	phrog_8684	NA	unknown function
UHGV-0061505_20	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-0061505_20	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-0061505_20	Pfam	PF09643	YopX protein	YopX
UHGV-0061505_20	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0061505_20	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0061505_21	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0061505_21	Structural annotation	PF15597	NA	NA
UHGV-0061505_24	UniRef90	UniRef90_A0A374MXG7	XRE family transcriptional regulator	NA
UHGV-0061505_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0061505_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0061505_25	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0061505_25	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0061505_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0061505_26	PHROG	phrog_1066	NA	unknown function
UHGV-0061505_26	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0061505_26	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0061505_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0061505_27	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0061505_27	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0061505_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0061505_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0061505_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0061505_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0061505_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0061505_28	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0061505_28	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0061505_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0061505_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0061505_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0061505_29	PHROG	phrog_21498	NA	unknown function
UHGV-0061505_29	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0061505_29	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0061505_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0061505_29	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0061505_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0061505_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0061505_30	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0061505_30	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0061505_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0061505_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0061505_30	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0061505_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0061505_31	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0061505_31	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0061505_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0061505_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0061505_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0061505_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0061505_32	PHROG	phrog_5223	neck protein	connector
UHGV-0061505_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0061505_32	Structural annotation	TIGR01560	NA	NA
UHGV-0061505_33	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0061505_33	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0061505_33	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0061505_33	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0061505_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0061505_34	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0061505_34	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0061505_34	Structural annotation	TIGR01725	NA	NA
UHGV-0061505_35	Structural annotation	PF12691	NA	NA
UHGV-0061505_36	PHROG	phrog_885	major tail protein	tail
UHGV-0061505_36	UniRef90	UniRef90_Q894J4	Conserved protein	NA
UHGV-0061505_36	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0061505_36	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0061505_37	PHROG	phrog_1021	NA	unknown function
UHGV-0061505_39	PHROG	phrog_23464	NA	unknown function
UHGV-0061505_39	UniRef90	UniRef90_A0A1C6JGQ9	Phage-related minor tail protein	NA
UHGV-0061505_39	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0061505_39	COG	COG5283	Phage-related tail protein	NA
UHGV-0061505_39	Structural annotation	COG3941	NA	NA
UHGV-0061505_40	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0061505_40	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0061505_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0061505_40	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0061505_41	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0061505_41	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0061505_41	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0061505_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0061505_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0061505_41	COG	COG4926	Phage-related protein	NA
UHGV-0061505_41	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0061505_42	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0061505_42	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0061505_42	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA