UHGV-0061649

Genome information

Genome length 40,403 bps

CDS count 57

Completeness 95.56% (high-quality)

geNomad score 0.9693

Prediction confidence Confident

Genome information
Genome ID	UHGV-0061649
vOTU ID	vOTU-072444
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_71975
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.56% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9693
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.28
Jumbo phage	No

Genome content
Genome length	40,403 bps
GC content	40.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.21%
Average CDS length	635.90 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0061649_1	KOfam	K14059	int; integrase	NA
UHGV-0061649_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0061649_1	UniRef90	UniRef90_A0A1C6H8L7	Site-specific tyrosine recombinase XerD	NA
UHGV-0061649_1	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-0061649_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0061649_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0061649_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0061649_2	eggNOG-mapper	1121115.AXVN01000047_gene1270	NA	NA
UHGV-0061649_3	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-0061649_3	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0061649_3	UniRef90	UniRef90_A0A1C6IT83	Plasmid stabilisation system protein	NA
UHGV-0061649_3	eggNOG-mapper	411469.EUBHAL_01995	Addiction module toxin, RelE StbE family	NA
UHGV-0061649_3	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0061649_3	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-0061649_3	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-0061649_4	eggNOG-mapper	180332.JTGN01000007_gene3629	NA	NA
UHGV-0061649_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0061649_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0061649_6	UniRef90	UniRef90_UPI00156F14B6	helix-turn-helix domain-containing protein	NA
UHGV-0061649_6	eggNOG-mapper	411468.CLOSCI_01457	Helix-turn-helix XRE-family like proteins	NA
UHGV-0061649_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0061649_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0061649_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0061649_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0061649_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0061649_7	UniRef90	UniRef90_UPI00189B16D1	helix-turn-helix domain-containing protein	NA
UHGV-0061649_7	eggNOG-mapper	1211844.CBLM010000016_gene1521	Helix-turn-helix XRE-family like proteins	NA
UHGV-0061649_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0061649_13	PHROG	phrog_14088	NA	unknown function
UHGV-0061649_13	UniRef90	UniRef90_UPI001655B004	carboxypeptidase	NA
UHGV-0061649_13	eggNOG-mapper	626523.GCWU000342_01045	NA	NA
UHGV-0061649_15	PHROG	phrog_585	NA	unknown function
UHGV-0061649_15	UniRef90	UniRef90_UPI001654CF6A	NA	NA
UHGV-0061649_15	eggNOG-mapper	1235798.C817_04760	NA	NA
UHGV-0061649_15	Pfam	PF10711	NA	DUF2513
UHGV-0061649_15	Structural annotation	PF10711, TIGR04176, COG5045	NA	NA
UHGV-0061649_21	PHROG	phrog_6058	NA	unknown function
UHGV-0061649_21	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0061649_21	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0061649_21	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0061649_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0061649_22	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0061649_22	Structural annotation	PF01446	NA	NA
UHGV-0061649_23	UniRef90	UniRef90_A0A1C6IUE3	Ribonuclease H	NA
UHGV-0061649_23	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0061649_23	Pfam	PF00075	RNase H	RNase_H
UHGV-0061649_23	COG	COG0328	Ribonuclease HI	NA
UHGV-0061649_23	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0061649_25	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0061649_25	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0061649_25	UniRef90	UniRef90_UPI001C00DAF9	ParA family protein	NA
UHGV-0061649_25	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0061649_25	Pfam	PF13614	AAA domain	AAA_31
UHGV-0061649_25	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0061649_25	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0061649_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0061649_26	PHROG	phrog_15077	NA	unknown function
UHGV-0061649_26	UniRef90	UniRef90_UPI0018AA1051	ParB/RepB/Spo0J family partition protein	NA
UHGV-0061649_26	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0061649_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0061649_26	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0061649_29	UniRef90	UniRef90_UPI001C00FD03	NA	NA
UHGV-0061649_30	UniRef90	UniRef90_UPI001898116D	NA	NA
UHGV-0061649_30	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0061649_30	Pfam	PF04448	NA	DUF551
UHGV-0061649_30	Structural annotation	PF04448	NA	NA
UHGV-0061649_31	PHROG	phrog_31560	NA	unknown function
UHGV-0061649_31	eggNOG-mapper	585501.HMPREF6123_0413	NA	NA
UHGV-0061649_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0061649_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0061649_32	UniRef90	UniRef90_A0A1C6IVA5	Single-stranded DNA-binding protein	NA
UHGV-0061649_32	eggNOG-mapper	411459.RUMOBE_00993	NA	NA
UHGV-0061649_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0061649_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0061649_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0061649_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0061649_32	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0061649_33	PHROG	phrog_7566	NA	unknown function
UHGV-0061649_33	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0061649_36	PHROG	phrog_19011	NA	unknown function
UHGV-0061649_36	Structural annotation	PF17516, COG4466	NA	NA
UHGV-0061649_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0061649_37	UniRef90	UniRef90_A0A1C6IW44	RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1	NA
UHGV-0061649_37	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0061649_37	Pfam	PF07374	NA	DUF1492
UHGV-0061649_37	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0061649_37	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0061649_38	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0061649_38	UniRef90	UniRef90_A0A1C6IUY5	HNH domain-containing protein	NA
UHGV-0061649_38	eggNOG-mapper	411459.RUMOBE_00940	HNH endonuclease	NA
UHGV-0061649_38	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0061649_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0061649_39	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0061649_39	UniRef90	UniRef90_A0A1C6IV70	Phage terminase, small subunit	NA
UHGV-0061649_39	eggNOG-mapper	411459.RUMOBE_00939	Phage terminase, small subunit	NA
UHGV-0061649_39	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0061649_39	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0061649_39	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0061649_39	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0061649_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0061649_40	UniRef90	UniRef90_A0A1C6IVJ8	Phage terminase-like protein, large subunit	NA
UHGV-0061649_40	eggNOG-mapper	411459.RUMOBE_00938	NA	NA
UHGV-0061649_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0061649_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0061649_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0061649_40	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0061649_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0061649_41	UniRef90	UniRef90_A0A1C6IVH0	Phage portal protein, HK97 family	NA
UHGV-0061649_41	eggNOG-mapper	411459.RUMOBE_00937	NA	NA
UHGV-0061649_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0061649_41	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0061649_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0061649_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0061649_42	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0061649_42	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0061649_42	UniRef90	UniRef90_A0A1C6IV57	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0061649_42	eggNOG-mapper	536233.CLO_1423	Belongs to the peptidase S14 family	NA
UHGV-0061649_42	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0061649_42	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0061649_42	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0061649_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0061649_43	UniRef90	UniRef90_UPI001D08E8BE	phage major capsid protein	NA
UHGV-0061649_43	eggNOG-mapper	97139.C824_05970	Phage major capsid protein, HK97 family	NA
UHGV-0061649_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0061649_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0061649_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0061649_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0061649_44	PHROG	phrog_5223	neck protein	connector
UHGV-0061649_44	eggNOG-mapper	411459.RUMOBE_00934	NA	NA
UHGV-0061649_44	Structural annotation	TIGR01560	NA	NA
UHGV-0061649_45	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0061649_45	UniRef90	UniRef90_A5ZPL6	Putative phage head-tail adaptor	NA
UHGV-0061649_45	eggNOG-mapper	1235792.C808_03061	NA	NA
UHGV-0061649_45	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0061649_46	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0061649_46	UniRef90	UniRef90_A0A1C6IVB7	Phage protein, HK97 gp10 family	NA
UHGV-0061649_46	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0061649_46	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0061649_47	UniRef90	UniRef90_A0A3D4X921	Phage tail protein	NA
UHGV-0061649_47	eggNOG-mapper	97139.C824_05966	NA	NA
UHGV-0061649_47	Structural annotation	PF05657	NA	NA
UHGV-0061649_48	PHROG	phrog_88	major tail protein	tail
UHGV-0061649_48	UniRef90	UniRef90_A0A1C6IVD8	Phage major tail protein, phi13 family	NA
UHGV-0061649_48	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0061649_48	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0061649_48	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0061649_49	Structural annotation	PF11836	NA	NA
UHGV-0061649_51	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0061649_51	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0061649_51	UniRef90	UniRef90_UPI0018AB1AB9	phage tail tape measure protein	NA
UHGV-0061649_51	eggNOG-mapper	1235794.C811_01380	Phage-related minor tail protein	NA
UHGV-0061649_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0061649_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0061649_51	COG	COG5283	Phage-related tail protein	NA
UHGV-0061649_52	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0061649_52	UniRef90	UniRef90_UPI001654ECC4	phage tail family protein	NA
UHGV-0061649_52	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0061649_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-0061649_52	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0061649_53	Structural annotation	PF07761	NA	NA
UHGV-0061649_54	PHROG	phrog_18110	NA	unknown function
UHGV-0061649_54	UniRef90	UniRef90_UPI001D06F077	phage tail protein	NA
UHGV-0061649_54	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0061649_54	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0061649_54	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0061649_54	COG	COG4926	Phage-related protein	NA
UHGV-0061649_54	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0061649_56	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0061649_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0061649_56	UniRef90	UniRef90_UPI001655E4D5	tyrosine-type recombinase/integrase	NA
UHGV-0061649_56	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0061649_56	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0061649_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0061649_56	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0061649_56	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0061649_57	KOfam	K14059	int; integrase	NA
UHGV-0061649_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0061649_57	UniRef90	UniRef90_UPI0005163400	site-specific integrase	NA
UHGV-0061649_57	eggNOG-mapper	500632.CLONEX_04135	Belongs to the 'phage' integrase family	NA
UHGV-0061649_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0061649_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0061649_57	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA