UHGV-0061655

Genome information

Genome length 42,199 bps

CDS count 71

Completeness 99.60% (high-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0061655
vOTU ID	vOTU-067333
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_71973
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.60% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.94
Jumbo phage	No

Genome content
Genome length	42,199 bps
GC content	55.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	91.80%
Average CDS length	549.25 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0061655_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0061655_1	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0061655_1	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0061655_1	Pfam	PF07374	NA	DUF1492
UHGV-0061655_1	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0061655_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0061655_3	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0061655_3	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0061655_3	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0061655_3	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0061655_3	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0061655_3	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0061655_3	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0061655_4	PHROG	phrog_3136	NA	unknown function
UHGV-0061655_4	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0061655_4	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0061655_4	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0061655_4	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-0061655_6	Structural annotation	PF11417	NA	NA
UHGV-0061655_7	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0061655_7	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0061655_7	UniRef90	UniRef90_A0A844D5V0	DnaD domain protein	NA
UHGV-0061655_7	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0061655_7	Pfam	PF19808	NA	DUF6291
UHGV-0061655_7	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0061655_7	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0061655_7	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0061655_8	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-0061655_8	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0061655_9	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0061655_9	UniRef90	UniRef90_A0A3A6EAW6	Phage recombination protein Bet	NA
UHGV-0061655_9	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-0061655_9	Pfam	PF03837	RecT family	RecT
UHGV-0061655_9	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0061655_9	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0061655_9	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0061655_10	PHROG	phrog_674	NA	unknown function
UHGV-0061655_10	UniRef90	UniRef90_A0A3A6E846	NA	NA
UHGV-0061655_10	eggNOG-mapper	556268.OFAG_00840	NA	NA
UHGV-0061655_10	Pfam	PF07083	NA	DUF1351
UHGV-0061655_10	Structural annotation	PF07083	NA	NA
UHGV-0061655_13	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0061655_14	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0061655_16	PHROG	phrog_4433	NA	unknown function
UHGV-0061655_16	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0061655_16	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0061655_16	Structural annotation	PF12120, NF007410	NA	NA
UHGV-0061655_19	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0061655_19	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0061655_20	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0061655_20	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0061655_20	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0061655_20	eggNOG-mapper	1230342.CTM_16892	Phage antirepressor protein	NA
UHGV-0061655_20	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0061655_20	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0061655_20	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0061655_20	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0061655_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0061655_21	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0061655_21	eggNOG-mapper	699218.HMPREF0889_0208	Helix-turn-helix XRE-family like proteins	NA
UHGV-0061655_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0061655_21	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0061655_21	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0061655_22	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0061655_24	PHROG	phrog_888	NA	unknown function
UHGV-0061655_24	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0061655_24	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0061655_24	Pfam	PF14471	NA	DUF4428
UHGV-0061655_24	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0061655_24	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0061655_27	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0061655_28	KOfam	K14059	int; integrase	NA
UHGV-0061655_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0061655_28	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0061655_28	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0061655_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0061655_28	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0061655_28	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0061655_30	Structural annotation	PF12510	NA	NA
UHGV-0061655_31	PHROG	phrog_20016	NA	unknown function
UHGV-0061655_31	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0061655_31	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0061655_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0061655_32	PHROG	phrog_16490	NA	unknown function
UHGV-0061655_32	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0061655_33	PHROG	phrog_22984	NA	unknown function
UHGV-0061655_34	PHROG	phrog_21718	NA	unknown function
UHGV-0061655_34	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0061655_35	PHROG	phrog_3754	NA	unknown function
UHGV-0061655_35	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0061655_37	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0061655_37	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0061655_38	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0061655_38	UniRef90	UniRef90_UPI001C11ECC0	AP2 domain-containing protein	NA
UHGV-0061655_38	eggNOG-mapper	742740.HMPREF9474_00071	NA	NA
UHGV-0061655_38	Pfam	PF00847	AP2 domain	AP2
UHGV-0061655_38	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0061655_39	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0061655_42	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0061655_43	PHROG	phrog_15303	NA	unknown function
UHGV-0061655_43	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0061655_45	KOfam	K07273	acm; lysozyme	NA
UHGV-0061655_45	PHROG	phrog_291	endolysin	lysis
UHGV-0061655_45	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0061655_45	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0061655_45	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0061655_45	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0061655_45	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0061655_46	PHROG	phrog_1382	NA	unknown function
UHGV-0061655_48	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0061655_48	UniRef90	UniRef90_A0A350TI55	NA	NA
UHGV-0061655_48	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0061655_48	Pfam	PF19789	NA	DUF6273
UHGV-0061655_48	Structural annotation	PF19789	NA	NA
UHGV-0061655_50	PHROG	phrog_3558	tail protein	tail
UHGV-0061655_50	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0061655_50	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0061655_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0061655_50	COG	COG4926	Phage-related protein	NA
UHGV-0061655_50	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0061655_51	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0061655_51	COG	COG4722	Phage-related protein YomH	NA
UHGV-0061655_51	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0061655_52	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0061655_52	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0061655_52	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0061655_52	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0061655_52	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0061655_52	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0061655_52	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0061655_55	PHROG	phrog_885	major tail protein	tail
UHGV-0061655_55	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0061655_55	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0061655_56	Structural annotation	PF13554	NA	NA
UHGV-0061655_57	PHROG	phrog_17977	NA	unknown function
UHGV-0061655_57	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0061655_57	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0061655_59	PHROG	phrog_544	major head protein	head and packaging
UHGV-0061655_59	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0061655_59	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0061655_59	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0061655_62	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0061655_62	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0061655_62	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0061655_62	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0061655_62	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0061655_65	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0061655_65	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0061655_65	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0061655_65	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0061655_65	COG	COG2369	NA	NA
UHGV-0061655_65	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0061655_67	PHROG	phrog_64	portal protein	head and packaging
UHGV-0061655_67	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0061655_67	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0061655_67	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0061655_67	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0061655_68	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0061655_68	PHROG	phrog_10250	NA	unknown function
UHGV-0061655_68	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0061655_68	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0061655_68	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0061655_68	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0061655_68	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0061655_68	COG	COG1783	Phage terminase large subunit	NA
UHGV-0061655_68	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0061655_69	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0061655_69	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0061655_69	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0061655_69	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0061655_70	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0061655_70	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0061655_70	UniRef90	UniRef90_A0A1H0YNW6	Methyltransferase	NA
UHGV-0061655_70	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0061655_70	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0061655_70	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0061655_70	COG	COG0863	DNA modification methylase	NA
UHGV-0061655_70	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0061655_71	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0061655_71	UniRef90	UniRef90_A0A3F3JUE2	ParB domain-containing protein	NA
UHGV-0061655_71	eggNOG-mapper	748224.HMPREF9436_03344	ParB-like nuclease domain	NA
UHGV-0061655_71	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0061655_71	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0061655_71	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0061655_71	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA