UHGV-0061658

Genome information

Genome length 35,324 bps

CDS count 49

Completeness 97.67% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0061658
vOTU ID	vOTU-013957
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_71972
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.67% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.53
Jumbo phage	No

Genome content
Genome length	35,324 bps
GC content	34.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	95.06%
Average CDS length	688.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0061658_1	UniRef90	UniRef90_A0A413S044	Peptidase_C39_2 domain-containing protein	NA
UHGV-0061658_1	eggNOG-mapper	1444309.JAQG01000003_gene4446	Papain-like cysteine protease AvrRpt2	NA
UHGV-0061658_1	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0061658_1	COG	COG4990	Predicted cysteine peptidase, C39 family	NA
UHGV-0061658_1	Structural annotation	PF03412, PF18342, NF033920, NF041850, COG3271, COG4991	NA	NA
UHGV-0061658_2	PHROG	phrog_199	holin	lysis
UHGV-0061658_2	UniRef90	UniRef90_A0A416C5W4	Holin	NA
UHGV-0061658_2	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0061658_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0061658_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0061658_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0061658_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0061658_5	PHROG	phrog_16164	NA	unknown function
UHGV-0061658_5	Structural annotation	PF10651, PF19487, NF033814, COG2372	NA	NA
UHGV-0061658_6	PHROG	phrog_6616	tail protein	tail
UHGV-0061658_6	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0061658_6	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0061658_6	COG	COG4926	Phage-related protein	NA
UHGV-0061658_6	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0061658_7	PHROG	phrog_1194	NA	unknown function
UHGV-0061658_7	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0061658_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0061658_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0061658_8	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0061658_8	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0061658_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0061658_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0061658_9	PHROG	phrog_8355	NA	unknown function
UHGV-0061658_9	UniRef90	UniRef90_UPI001F2CFAB2	bacteriophage Gp15 family protein	NA
UHGV-0061658_9	eggNOG-mapper	483218.BACPEC_01147	Bacteriophage Gp15 protein	NA
UHGV-0061658_10	PHROG	phrog_8300	NA	unknown function
UHGV-0061658_10	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0061658_10	Structural annotation	PF06854	NA	NA
UHGV-0061658_11	PHROG	phrog_820	major tail protein	tail
UHGV-0061658_11	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0061658_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0061658_12	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0061658_12	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0061658_12	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-0061658_12	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0061658_12	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0061658_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0061658_13	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0061658_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0061658_14	PHROG	phrog_8710	NA	unknown function
UHGV-0061658_14	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0061658_14	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0061658_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0061658_15	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0061658_16	PHROG	phrog_1378	NA	unknown function
UHGV-0061658_16	eggNOG-mapper	552396.HMPREF0863_01636	NA	NA
UHGV-0061658_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0061658_17	UniRef90	UniRef90_A0A413RCT9	Capsid protein	NA
UHGV-0061658_17	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-0061658_17	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0061658_18	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0061658_18	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0061658_20	PHROG	phrog_3675	NA	unknown function
UHGV-0061658_20	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0061658_20	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0061658_20	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0061658_20	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0061658_21	Structural annotation	PF21279, NF040942	NA	NA
UHGV-0061658_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0061658_22	UniRef90	UniRef90_A0A1C5VPR8	ATPase involved in DNA repair	NA
UHGV-0061658_22	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0061658_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0061658_22	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0061658_22	Structural annotation	PF06152	NA	NA
UHGV-0061658_23	PHROG	phrog_25639	NA	unknown function
UHGV-0061658_23	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0061658_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0061658_24	UniRef90	UniRef90_UPI00164B2A37	phage portal protein	NA
UHGV-0061658_24	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0061658_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0061658_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0061658_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0061658_25	UniRef90	UniRef90_A0A413RCQ1	Terminase	NA
UHGV-0061658_25	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0061658_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0061658_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0061658_25	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0061658_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0061658_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0061658_26	UniRef90	UniRef90_A0A413RCV1	Terminase small subunit	NA
UHGV-0061658_26	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0061658_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0061658_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0061658_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0061658_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0061658_27	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-0061658_27	eggNOG-mapper	1111454.HMPREF1250_0009	NA	NA
UHGV-0061658_27	Structural annotation	PF07374, MF_00674, TIGR02984, COG1342	NA	NA
UHGV-0061658_29	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0061658_29	UniRef90	UniRef90_R5Z594	Gp26	NA
UHGV-0061658_29	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-0061658_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0061658_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0061658_29	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0061658_30	PHROG	phrog_21026	NA	unknown function
UHGV-0061658_31	PHROG	phrog_918	NA	unknown function
UHGV-0061658_31	UniRef90	UniRef90_UPI00164A39C5	NA	NA
UHGV-0061658_31	eggNOG-mapper	1567484.A0A0A7NTZ5_9CAUD	NA	NA
UHGV-0061658_31	Pfam	PF19791	NA	DUF6275
UHGV-0061658_31	Structural annotation	PF19791	NA	NA
UHGV-0061658_32	PHROG	phrog_17690	NA	unknown function
UHGV-0061658_32	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0061658_32	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0061658_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0061658_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0061658_34	UniRef90	UniRef90_R5YR65	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0061658_34	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0061658_34	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0061658_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0061658_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0061658_34	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0061658_36	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0061658_36	UniRef90	UniRef90_UPI00143B22DC	NA	NA
UHGV-0061658_36	eggNOG-mapper	357809.Cphy_2984	NA	NA
UHGV-0061658_36	Pfam	PF06048	NA	DUF927
UHGV-0061658_36	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0061658_36	COG	COG5519	NA	NA
UHGV-0061658_36	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0061658_37	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0061658_37	PHROG	phrog_11992	NA	unknown function
UHGV-0061658_37	UniRef90	UniRef90_A0A6N2RL39	DNA primase	NA
UHGV-0061658_37	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0061658_37	PADLOC	drt-UG29	DRT	DRT
UHGV-0061658_37	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0061658_37	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0061658_37	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0061658_38	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0061658_38	UniRef90	UniRef90_A0A2K3JBB6	ERCC4 domain-containing protein	NA
UHGV-0061658_38	eggNOG-mapper	1504823.CCMM01000008_gene1063	NA	NA
UHGV-0061658_38	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0061658_38	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0061658_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0061658_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0061658_39	UniRef90	UniRef90_R5ZLV4	Single-stranded DNA-binding protein	NA
UHGV-0061658_39	eggNOG-mapper	500632.CLONEX_02624	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0061658_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0061658_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0061658_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0061658_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0061658_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0061658_40	PHROG	phrog_3657	NA	unknown function
UHGV-0061658_40	eggNOG-mapper	1567011.A0A0A7RUE9_9VIRU	NA	NA
UHGV-0061658_41	PHROG	phrog_1499	NA	unknown function
UHGV-0061658_41	UniRef90	UniRef90_A0A1M7NHQ3	p-loop containing region of AAA domain-containing protein	NA
UHGV-0061658_41	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0061658_41	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0061658_41	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0061658_42	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0061658_42	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0061658_42	UniRef90	UniRef90_A0A1C6GFL6	Exodeoxyribonuclease 8	NA
UHGV-0061658_42	eggNOG-mapper	1454004.AW11_02382	NA	NA
UHGV-0061658_42	Pfam	PF12684	NA	DUF3799
UHGV-0061658_42	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0061658_42	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0061658_44	UniRef90	UniRef90_A0A416KCJ3	DNA-binding protein	NA
UHGV-0061658_44	eggNOG-mapper	1280692.AUJL01000009_gene2975	Helix-turn-helix domain	NA
UHGV-0061658_44	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0061658_44	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0061658_45	UniRef90	UniRef90_UPI001EE0CE96	helix-turn-helix domain-containing protein	NA
UHGV-0061658_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0061658_46	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0061658_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0061658_46	UniRef90	UniRef90_A0A828T008	HTH cro/C1-type domain-containing protein	NA
UHGV-0061658_46	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-0061658_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0061658_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0061658_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0061658_46	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0061658_47	PHROG	phrog_87	metallo-protease	other
UHGV-0061658_47	UniRef90	UniRef90_UPI00164AB16E	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0061658_47	eggNOG-mapper	556261.HMPREF0240_01267	Zn peptidase	NA
UHGV-0061658_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0061658_47	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0061658_47	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0061658_48	eggNOG-mapper	357809.Cphy_2596	Bacterial Ig-like domain (group 2)	NA
UHGV-0061658_48	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0061658_48	COG	COG5492	NA	NA
UHGV-0061658_49	KOfam	K14059	int; integrase	NA
UHGV-0061658_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0061658_49	UniRef90	UniRef90_A0A414B875	Site-specific integrase	NA
UHGV-0061658_49	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-0061658_49	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0061658_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0061658_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0061658_49	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA