UHGV-0061714

Genome information

Genome length 25,532 bps

CDS count 34

Completeness 57.23% (medium-quality)

geNomad score 0.9562

Prediction confidence Confident

Genome information
Genome ID	UHGV-0061714
vOTU ID	vOTU-036700
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_67724
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9562
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.82
Jumbo phage	No

Genome content
Genome length	25,532 bps
GC content	50.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	92.05%
Average CDS length	694.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0061714_1	PHROG	phrog_456	Rz-like spanin	lysis
UHGV-0061714_1	UniRef90	UniRef90_A0A4Y9DVU2	Rz1 lytic protein	NA
UHGV-0061714_1	eggNOG-mapper	1407493.U5P461_9CAUD	NA	NA
UHGV-0061714_2	PHROG	phrog_30030	NA	unknown function
UHGV-0061714_3	PHROG	phrog_22590	NA	unknown function
UHGV-0061714_4	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0061714_4	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0061714_4	UniRef90	UniRef90_A0A6D1JX09	HNH endonuclease	NA
UHGV-0061714_4	eggNOG-mapper	1225789.M1FQV2_9CAUD	nucleic acid binding	NA
UHGV-0061714_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0061714_4	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0061714_5	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0061714_5	UniRef90	UniRef90_A0A2A7U7F5	Phage terminase small subunit P27 family	NA
UHGV-0061714_5	eggNOG-mapper	55884.Q8SBI1_BPSF5	Phage terminase, small subunit	NA
UHGV-0061714_5	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0061714_5	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0061714_5	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0061714_6	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0061714_6	UniRef90	UniRef90_P59217	Putative terminase large subunit	NA
UHGV-0061714_6	eggNOG-mapper	55884.TERL_BPSF5	Phage Terminase	NA
UHGV-0061714_6	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0061714_6	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0061714_6	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0061714_7	PHROG	phrog_7105	NA	unknown function
UHGV-0061714_7	UniRef90	UniRef90_A0A163XUY0	Membrane protein	NA
UHGV-0061714_7	eggNOG-mapper	1332071.L581_3145	NA	NA
UHGV-0061714_8	PHROG	phrog_12	portal protein	head and packaging
UHGV-0061714_8	UniRef90	UniRef90_Q8SBI0	Portal protein	NA
UHGV-0061714_8	eggNOG-mapper	55884.Q8SBI0_BPSF5	Phage portal protein	NA
UHGV-0061714_8	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0061714_8	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0061714_8	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0061714_9	KOfam	K06904	NA	NA
UHGV-0061714_9	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0061714_9	UniRef90	UniRef90_A0A0F6YUL8	HK97 family phage prohead protease	NA
UHGV-0061714_9	eggNOG-mapper	55884.Q8SBH9_BPSF5	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0061714_9	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0061714_9	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0061714_9	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0061714_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0061714_10	UniRef90	UniRef90_E3PEG2	Phage capsid protein	NA
UHGV-0061714_10	eggNOG-mapper	55884.Q8SBH8_BPSF5	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0061714_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0061714_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0061714_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0061714_11	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0061714_11	UniRef90	UniRef90_A0A0H0IIY5	Phage gp6-like head-tail connector protein	NA
UHGV-0061714_11	eggNOG-mapper	66284.S5FKK6_BPSF2	Phage gp6-like head-tail connector protein	NA
UHGV-0061714_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0061714_11	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0061714_11	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0061714_12	PHROG	phrog_25	head closure Hc1	connector
UHGV-0061714_12	UniRef90	UniRef90_A0A5F2KZS8	Head-tail adaptor protein	NA
UHGV-0061714_12	eggNOG-mapper	1407493.U5P0R0_9CAUD	Phage head-tail joining protein	NA
UHGV-0061714_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0061714_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0061714_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0061714_13	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0061714_13	UniRef90	UniRef90_A0A0H3NMS1	Predicted bacteriophage protein	NA
UHGV-0061714_13	eggNOG-mapper	1407493.U5P416_9CAUD	NA	NA
UHGV-0061714_13	Structural annotation	TIGR01725	NA	NA
UHGV-0061714_14	PHROG	phrog_209	portal protein	head and packaging
UHGV-0061714_14	UniRef90	UniRef90_A0A061KQS1	NA	NA
UHGV-0061714_14	eggNOG-mapper	754331.AEME01000001_gene210	NA	NA
UHGV-0061714_14	Structural annotation	PF09646	NA	NA
UHGV-0061714_15	PHROG	phrog_208	NA	unknown function
UHGV-0061714_15	UniRef90	UniRef90_J7Q674	NA	NA
UHGV-0061714_15	eggNOG-mapper	754331.AEME01000001_gene211	NA	NA
UHGV-0061714_15	Pfam	PF10948	NA	DUF2635
UHGV-0061714_15	Structural annotation	PF10948	NA	NA
UHGV-0061714_16	PHROG	phrog_165	tail sheath	tail
UHGV-0061714_16	UniRef90	UniRef90_Q8SBH2	Tail sheath protein	NA
UHGV-0061714_16	eggNOG-mapper	66284.S5FKL0_BPSF2	Phage tail sheath protein	NA
UHGV-0061714_16	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0061714_16	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0061714_16	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0061714_17	PHROG	phrog_185	tail tube protein	tail
UHGV-0061714_17	UniRef90	UniRef90_J7QME8	NA	NA
UHGV-0061714_17	eggNOG-mapper	1225789.M1FJ91_9CAUD	Phage tail tube protein	NA
UHGV-0061714_17	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0061714_17	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0061714_18	PHROG	phrog_166	tail protein	tail
UHGV-0061714_18	UniRef90	UniRef90_A0A3A5JV55	Phage tail assembly protein	NA
UHGV-0061714_18	eggNOG-mapper	1216966.BAUC01000041_gene2866	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0061714_18	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0061714_18	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0061714_19	PHROG	phrog_26612	NA	unknown function
UHGV-0061714_19	UniRef90	UniRef90_E3PEH0	Putative phage tail protein	NA
UHGV-0061714_19	eggNOG-mapper	754331.AEME01000001_gene216	NA	NA
UHGV-0061714_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0061714_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0061714_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0061714_19	Structural annotation	TIGR01760	NA	NA
UHGV-0061714_20	PHROG	phrog_5485	NA	unknown function
UHGV-0061714_20	eggNOG-mapper	667121.ET1_08_01180	NA	NA
UHGV-0061714_21	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0061714_21	UniRef90	UniRef90_B7LJN3	Tail/DNA circulation protein	NA
UHGV-0061714_21	eggNOG-mapper	55884.Q8SBG8_BPSF5	DNA circularisation protein N-terminus	NA
UHGV-0061714_21	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0061714_21	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0061714_22	PHROG	phrog_177	tail protein	tail
UHGV-0061714_22	UniRef90	UniRef90_E3PEH3	Putative phage tail protein	NA
UHGV-0061714_22	eggNOG-mapper	1407493.U5P0H6_9CAUD	NA	NA
UHGV-0061714_22	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0061714_22	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0061714_23	PHROG	phrog_28548	NA	unknown function
UHGV-0061714_23	UniRef90	UniRef90_A0A5F0A122	Baseplate assembly protein	NA
UHGV-0061714_23	eggNOG-mapper	66284.S5FXM5_BPSF2	Bacteriophage Mu Gp45 protein	NA
UHGV-0061714_23	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0061714_23	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0061714_23	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0061714_24	PHROG	phrog_180	tail protein	tail
UHGV-0061714_24	UniRef90	UniRef90_A0A093D1I0	Bacteriophage V tail protein	NA
UHGV-0061714_24	eggNOG-mapper	1225789.M1FPE5_9CAUD	Phage protein GP46	NA
UHGV-0061714_24	Pfam	PF07409	NA	GP46
UHGV-0061714_24	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0061714_25	PHROG	phrog_2103	baseplate protein	tail
UHGV-0061714_25	UniRef90	UniRef90_A0A4C4LBQ7	Baseplate_J domain-containing protein	NA
UHGV-0061714_25	eggNOG-mapper	1225789.M1FQW3_9CAUD	Baseplate J-like protein	NA
UHGV-0061714_25	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0061714_25	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0061714_26	PHROG	phrog_203	tail protein	tail
UHGV-0061714_26	UniRef90	UniRef90_UPI0009006D48	NA	NA
UHGV-0061714_26	eggNOG-mapper	55884.O22003_BPSF5	NA	NA
UHGV-0061714_26	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0061714_26	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0061714_27	PHROG	phrog_18834	NA	unknown function
UHGV-0061714_27	UniRef90	UniRef90_UPI001117F6AB	carbohydrate kinase	NA
UHGV-0061714_27	eggNOG-mapper	316407.4062729	NA	NA
UHGV-0061714_28	PHROG	phrog_188	tail fiber assembly protein	tail
UHGV-0061714_28	UniRef90	UniRef90_A0A4P9D4P7	Phage tail protein	NA
UHGV-0061714_28	eggNOG-mapper	399742.Ent638_0820	Caudovirales tail fibre assembly protein, lambda gpK	NA
UHGV-0061714_28	Pfam	PF02413	Caudovirales tail fibre assembly protein, lambda gpK	Caudo_TAP
UHGV-0061714_28	Structural annotation	PF02413	NA	NA
UHGV-0061714_29	KOfam	K16568	exoZ; exopolysaccharide production protein ExoZ	NA
UHGV-0061714_29	PHROG	phrog_3333	O-acetyltransferase	other
UHGV-0061714_29	UniRef90	UniRef90_UPI000390DD5F	acyltransferase	NA
UHGV-0061714_29	eggNOG-mapper	629265.PMA4326_02857	Acyltransferase family	NA
UHGV-0061714_29	Pfam	PF01757	Acyltransferase family	Acyl_transf_3
UHGV-0061714_29	COG	COG1835	Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains	NA
UHGV-0061714_29	Structural annotation	PF01757, MF_01949, NF003014, COG1835	NA	NA
UHGV-0061714_30	PHROG	phrog_14880	NA	unknown function
UHGV-0061714_30	UniRef90	UniRef90_UPI00177CEEAF	integrase	NA
UHGV-0061714_30	eggNOG-mapper	155864.EDL933_3519	Belongs to the 'phage' integrase family	NA
UHGV-0061714_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0061714_31	KOfam	K12149	dinI; DNA-damage-inducible protein I	NA
UHGV-0061714_31	PHROG	phrog_189	RecA filament binding protein DinI	DNA, RNA and nucleotide metabolism
UHGV-0061714_31	UniRef90	UniRef90_A0A086VDR7	DNA damage-inducible protein	NA
UHGV-0061714_31	eggNOG-mapper	1147152.K7PLW4_9CAUD	DinI-like family	NA
UHGV-0061714_31	Pfam	PF06183	DinI-like family	DinI
UHGV-0061714_32	KOfam	K14059	int; integrase	NA
UHGV-0061714_32	PHROG	phrog_22184	NA	unknown function
UHGV-0061714_32	UniRef90	UniRef90_S1EQQ6	Tyr recombinase domain-containing protein	NA
UHGV-0061714_32	eggNOG-mapper	1440052.EAKF1_ch1767	Belongs to the 'phage' integrase family	NA
UHGV-0061714_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0061714_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0061714_32	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA
UHGV-0061714_33	KOfam	K05539	dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]	NA
UHGV-0061714_33	PHROG	phrog_23281	NA	unknown function
UHGV-0061714_33	UniRef90	UniRef90_Q8X5V6	tRNA-dihydrouridine(20/20a) synthase	NA
UHGV-0061714_33	eggNOG-mapper	1440052.EAKF1_ch1849c	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs	NA
UHGV-0061714_33	Pfam	PF01207	Dihydrouridine synthase (Dus)	Dus
UHGV-0061714_33	NCBIFam	TIGR00742.1	tRNA dihydrouridine(20/20a) synthase DusA	NA
UHGV-0061714_33	COG	COG0042	tRNA-dihydrouridine synthase	NA
UHGV-0061714_33	HAMAP	MF_02041	tRNA-dihydrouridine(20/20a) synthase [dusA]	NA
UHGV-0061714_34	UniRef90	UniRef90_UPI0019348708	envelope stress response protein PspG	NA
UHGV-0061714_34	eggNOG-mapper	199310.c5019	phage shock	NA
UHGV-0061714_34	Pfam	PF09583	Phage shock protein G (Phageshock_PspG)	Phageshock_PspG
UHGV-0061714_34	NCBIFam	TIGR02975.1	envelope stress response protein PspG	NA