UHGV-0061735

Genome information

Genome length 33,164 bps

CDS count 55

Completeness 81.72% (medium-quality)

geNomad score 0.9653

Prediction confidence Confident

Genome information
Genome ID	UHGV-0061735
vOTU ID	vOTU-041160
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_85708
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9653
Virus hallmark genes (geNomad)	19
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	81.51
Jumbo phage	No

Genome content
Genome length	33,164 bps
GC content	54.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.85%
Average CDS length	575.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0061735_6	PHROG	phrog_236	nucleotide kinase	other
UHGV-0061735_6	eggNOG-mapper	442493.A8E2B0_BPPHE	NA	NA
UHGV-0061735_6	Pfam	PF11753	NA	DUF3310
UHGV-0061735_7	PHROG	phrog_743	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0061735_7	UniRef90	UniRef90_R7IJX6	NA	NA
UHGV-0061735_7	eggNOG-mapper	1268622.AVS7_00674	NA	NA
UHGV-0061735_7	Structural annotation	PF05037, MF_00984, NF004512, COG2965	NA	NA
UHGV-0061735_8	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0061735_8	UniRef90	UniRef90_UPI001F14158A	siphovirus Gp157 family protein	NA
UHGV-0061735_8	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0061735_8	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0061735_8	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0061735_9	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0061735_9	UniRef90	UniRef90_R7IN71	NA	NA
UHGV-0061735_9	eggNOG-mapper	669262.COK_1592	NA	NA
UHGV-0061735_9	Pfam	PF13479	AAA domain	AAA_24
UHGV-0061735_9	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0061735_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0061735_12	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0061735_12	UniRef90	UniRef90_E7H635	HTH cro/C1-type domain-containing protein	NA
UHGV-0061735_12	eggNOG-mapper	742821.HMPREF9464_02173	Helix-turn-helix XRE-family like proteins	NA
UHGV-0061735_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0061735_12	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0061735_12	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0061735_12	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0061735_13	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0061735_13	UniRef90	UniRef90_UPI000A11D612	YdaS family helix-turn-helix protein	NA
UHGV-0061735_13	eggNOG-mapper	1037409.BJ6T_15590	Nitrate reductase delta subunit	NA
UHGV-0061735_13	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0061735_13	COG	COG3381	Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation	NA
UHGV-0061735_13	Structural annotation	PF15943, TIGR02607, COG4197	NA	NA
UHGV-0061735_14	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0061735_14	eggNOG-mapper	1217710.F969_01400	Helix-turn-helix domain	NA
UHGV-0061735_14	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0061735_14	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0061735_14	Structural annotation	PF04492, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0061735_16	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0061735_16	PHROG	phrog_5482	NA	unknown function
UHGV-0061735_16	UniRef90	UniRef90_R7IKC5	SF4 helicase domain-containing protein	NA
UHGV-0061735_16	eggNOG-mapper	257310.BB2209	DnaB-like helicase C terminal domain	NA
UHGV-0061735_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0061735_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-0061735_16	Structural annotation	PF03796, MF_04154, NF004109, COG0305	NA	NA
UHGV-0061735_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0061735_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0061735_19	UniRef90	UniRef90_R7IL81	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0061735_19	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0061735_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0061735_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0061735_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0061735_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0061735_22	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0061735_22	UniRef90	UniRef90_R5PK02	Putative HNH endonuclease	NA
UHGV-0061735_22	eggNOG-mapper	1357275.AVEL02000151_gene1515	HNH nucleases	NA
UHGV-0061735_22	AcrCatalog	cluster_19695	NA	NA
UHGV-0061735_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0061735_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0061735_22	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0061735_24	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0061735_24	UniRef90	UniRef90_UPI000DE972B2	phage terminase small subunit P27 family	NA
UHGV-0061735_24	eggNOG-mapper	1485544.JQKP01000008_gene1674	Phage terminase, small subunit	NA
UHGV-0061735_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0061735_24	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0061735_24	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0061735_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0061735_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0061735_25	UniRef90	UniRef90_UPI0006710F9A	terminase large subunit	NA
UHGV-0061735_25	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0061735_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0061735_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0061735_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0061735_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0061735_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0061735_26	UniRef90	UniRef90_A0A5B7ZK00	Phage portal protein	NA
UHGV-0061735_26	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0061735_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0061735_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0061735_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0061735_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0061735_27	KOfam	K06904	NA	NA
UHGV-0061735_27	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0061735_27	UniRef90	UniRef90_A0A5B7ZLN2	HK97 family phage prohead protease	NA
UHGV-0061735_27	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-0061735_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0061735_27	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0061735_27	COG	COG3740	Phage head maturation protease	NA
UHGV-0061735_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0061735_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0061735_28	UniRef90	UniRef90_A0A5B7ZMF6	Phage major capsid protein	NA
UHGV-0061735_28	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0061735_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0061735_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0061735_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0061735_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0061735_30	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0061735_30	UniRef90	UniRef90_A0A853IME7	Phage gp6-like head-tail connector protein	NA
UHGV-0061735_30	eggNOG-mapper	742821.HMPREF9464_01830	Phage gp6-like head-tail connector protein	NA
UHGV-0061735_30	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0061735_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0061735_30	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0061735_31	PHROG	phrog_25	head closure Hc1	connector
UHGV-0061735_31	UniRef90	UniRef90_A0A7Y1FS28	Phage head closure protein	NA
UHGV-0061735_31	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0061735_31	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0061735_31	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0061735_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0061735_32	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0061735_32	UniRef90	UniRef90_A0A7U6JN97	Putative membrane protein	NA
UHGV-0061735_32	eggNOG-mapper	1042876.PPS_1254	NA	NA
UHGV-0061735_32	Structural annotation	TIGR01725	NA	NA
UHGV-0061735_33	PHROG	phrog_209	portal protein	head and packaging
UHGV-0061735_33	eggNOG-mapper	29486.NJ56_17665	NA	NA
UHGV-0061735_33	Structural annotation	PF09646	NA	NA
UHGV-0061735_34	PHROG	phrog_165	tail sheath	tail
UHGV-0061735_34	UniRef90	UniRef90_R7I957	Mu tail sheath family protein	NA
UHGV-0061735_34	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0061735_34	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0061735_34	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0061735_34	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0061735_34	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0061735_35	PHROG	phrog_185	tail tube protein	tail
UHGV-0061735_35	UniRef90	UniRef90_A0A6L6YJW8	Phage tail protein	NA
UHGV-0061735_35	eggNOG-mapper	742821.HMPREF9464_01826	Phage tail tube protein	NA
UHGV-0061735_35	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0061735_35	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0061735_36	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0061735_38	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0061735_38	UniRef90	UniRef90_A0A6L6YME8	Phage tail tape measure protein	NA
UHGV-0061735_38	eggNOG-mapper	1122135.KB893169_gene2496	phage tail tape measure protein	NA
UHGV-0061735_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0061735_38	COG	COG5412	Phage-related protein	NA
UHGV-0061735_39	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0061735_39	UniRef90	UniRef90_R7I967	DNA_circ_N domain-containing protein	NA
UHGV-0061735_39	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0061735_39	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0061735_39	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0061735_39	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0061735_40	Pfam	PF09197	Rap1, DNA-binding	Rap1-DNA-bind
UHGV-0061735_41	PHROG	phrog_177	tail protein	tail
UHGV-0061735_41	UniRef90	UniRef90_R7I5A6	Phage tail protein putative	NA
UHGV-0061735_41	eggNOG-mapper	1395516.PMO01_05545	tail protein	NA
UHGV-0061735_41	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0061735_41	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0061735_41	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0061735_42	PHROG	phrog_28548	NA	unknown function
UHGV-0061735_42	UniRef90	UniRef90_R7I5Y4	Phage baseplate assembly V family protein	NA
UHGV-0061735_42	eggNOG-mapper	29486.NJ56_17710	Bacteriophage Mu Gp45 protein	NA
UHGV-0061735_42	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0061735_42	Pfam	PF18715	Phage spike trimer	Phage_spike
UHGV-0061735_42	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0061735_42	COG	COG4384	NA	NA
UHGV-0061735_43	UniRef90	UniRef90_UPI001CFF7C4A	NA	NA
UHGV-0061735_43	eggNOG-mapper	640511.BC1002_7156	NA	NA
UHGV-0061735_43	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0061735_44	PHROG	phrog_180	tail protein	tail
UHGV-0061735_44	UniRef90	UniRef90_UPI000E511FD8	phage GP46 family protein	NA
UHGV-0061735_44	eggNOG-mapper	742821.HMPREF9464_01818	Phage protein GP46	NA
UHGV-0061735_44	Pfam	PF07409	NA	GP46
UHGV-0061735_44	COG	COG4381	NA	NA
UHGV-0061735_44	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0061735_45	PHROG	phrog_6	baseplate protein	tail
UHGV-0061735_45	UniRef90	UniRef90_UPI000F604B2E	baseplate J/gp47 family protein	NA
UHGV-0061735_45	eggNOG-mapper	690850.Desaf_1930	Baseplate J-like protein	NA
UHGV-0061735_45	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0061735_45	COG	COG3299	NA	NA
UHGV-0061735_45	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0061735_46	PHROG	phrog_203	tail protein	tail
UHGV-0061735_46	UniRef90	UniRef90_A0A6L6YM70	NA	NA
UHGV-0061735_46	eggNOG-mapper	570967.JMLV01000018_gene457	NA	NA
UHGV-0061735_46	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0061735_46	COG	COG3778	NA	NA
UHGV-0061735_46	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0061735_47	PHROG	phrog_9116	tail protein	tail
UHGV-0061735_47	UniRef90	UniRef90_R7I616	Collar domain-containing protein	NA
UHGV-0061735_47	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-0061735_47	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0061735_47	COG	COG4675	Phage tail collar domain	NA
UHGV-0061735_47	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0061735_49	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0061735_49	PHROG	phrog_7	endolysin	lysis
UHGV-0061735_49	UniRef90	UniRef90_A0A191ZDU4	Lysozyme	NA
UHGV-0061735_49	eggNOG-mapper	556268.OFAG_00863	lysozyme	NA
UHGV-0061735_49	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0061735_49	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0061735_49	HAMAP	MF_04110	Endolysin	NA
UHGV-0061735_49	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0061735_53	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-0061735_53	COG	COG4675	Phage tail collar domain	NA
UHGV-0061735_54	UniRef90	UniRef90_R7I740	GK12566 gene product from transcript GK12566-RA	NA
UHGV-0061735_55	Structural annotation	PF18998	NA	NA