UHGV-0061932

Genome information

Genome length 19,989 bps

CDS count 32

Completeness 51.18% (medium-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0061932
vOTU ID	vOTU-041564
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_72152
BioSample	SAMEA2338638
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.03
Jumbo phage	No

Genome content
Genome length	19,989 bps
GC content	39.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	87.08%
Average CDS length	547.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0061932_1	KOfam	K14059	int; integrase	NA
UHGV-0061932_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0061932_1	UniRef90	UniRef90_A0A3R6QDD5	Site-specific integrase	NA
UHGV-0061932_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0061932_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0061932_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0061932_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0061932_2	UniRef90	UniRef90_UPI00189DFA3E	SAP domain-containing protein	NA
UHGV-0061932_2	eggNOG-mapper	1282664.H354_06896	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0061932_2	Pfam	PF02037	SAP domain	SAP
UHGV-0061932_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0061932_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0061932_3	UniRef90	UniRef90_A0A822LS29	HTH cro/C1-type domain-containing protein	NA
UHGV-0061932_3	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0061932_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0061932_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0061932_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0061932_3	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0061932_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0061932_4	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0061932_4	UniRef90	UniRef90_A0A822LL88	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0061932_4	eggNOG-mapper	1123263.AUKY01000072_gene2113	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0061932_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0061932_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0061932_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0061932_5	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0061932_5	Structural annotation	PF20063	NA	NA
UHGV-0061932_7	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0061932_7	UniRef90	UniRef90_UPI000E75BB92	YqaJ viral recombinase family protein	NA
UHGV-0061932_7	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0061932_7	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0061932_7	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0061932_7	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0061932_7	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0061932_9	PHROG	phrog_674	NA	unknown function
UHGV-0061932_9	UniRef90	UniRef90_UPI00156FBAC2	NA	NA
UHGV-0061932_9	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0061932_9	Pfam	PF07083	NA	DUF1351
UHGV-0061932_9	Structural annotation	PF07083	NA	NA
UHGV-0061932_11	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0061932_11	UniRef90	UniRef90_UPI00156DE752	phage recombination protein Bet	NA
UHGV-0061932_11	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0061932_11	Pfam	PF03837	RecT family	RecT
UHGV-0061932_11	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0061932_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0061932_11	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0061932_12	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0061932_12	UniRef90	UniRef90_A0A417W6H7	NA	NA
UHGV-0061932_12	eggNOG-mapper	742767.HMPREF9456_03412	NA	NA
UHGV-0061932_12	Pfam	PF06356	NA	DUF1064
UHGV-0061932_12	Structural annotation	PF06356	NA	NA
UHGV-0061932_13	eggNOG-mapper	1203606.HMPREF1526_01684	NA	NA
UHGV-0061932_14	PHROG	phrog_16304	NA	unknown function
UHGV-0061932_14	UniRef90	UniRef90_A0A3R6LJJ8	NA	NA
UHGV-0061932_14	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0061932_14	Pfam	PF19808	NA	DUF6291
UHGV-0061932_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0061932_14	Structural annotation	PF19808	NA	NA
UHGV-0061932_16	PHROG	phrog_9804	NA	unknown function
UHGV-0061932_16	UniRef90	UniRef90_A0A3R6Y4B9	Inhibitor_G39P domain-containing protein	NA
UHGV-0061932_16	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0061932_16	AcrCatalog	cluster_137185	NA	NA
UHGV-0061932_16	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0061932_16	Structural annotation	PF11417	NA	NA
UHGV-0061932_17	PHROG	phrog_5070	NA	unknown function
UHGV-0061932_17	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0061932_17	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0061932_17	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0061932_17	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0061932_19	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0061932_19	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0061932_19	UniRef90	UniRef90_A0A173W8R8	Modification methylase MboII	NA
UHGV-0061932_19	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0061932_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0061932_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0061932_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0061932_19	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0061932_21	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0061932_24	PHROG	phrog_874	NA	unknown function
UHGV-0061932_24	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0061932_24	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0061932_25	PHROG	phrog_17690	NA	unknown function
UHGV-0061932_25	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0061932_25	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0061932_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0061932_26	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0061932_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0061932_26	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0061932_27	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0061932_27	UniRef90	UniRef90_A0A173W6N8	ParB-like nuclease domain	NA
UHGV-0061932_27	eggNOG-mapper	936154.STP_1604	NA	NA
UHGV-0061932_27	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0061932_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0061932_27	Pfam	PF14386	NA	DUF4417
UHGV-0061932_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0061932_27	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0061932_29	PHROG	phrog_5057	NA	unknown function
UHGV-0061932_30	PHROG	phrog_9479	NA	unknown function
UHGV-0061932_30	eggNOG-mapper	511680.BUTYVIB_01226	NA	NA
UHGV-0061932_30	Structural annotation	PF15529	NA	NA