UHGV-0062041

Genome information

Genome length 40,074 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062041
vOTU ID	vOTU-008433
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_68515
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.9
Jumbo phage	No

Genome content
Genome length	40,074 bps
GC content	56.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.91%
Average CDS length	726.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062041_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0062041_1	eggNOG-mapper	1408422.JHYF01000021_gene969	Prophage endopeptidase tail	NA
UHGV-0062041_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0062041_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0062041_1	COG	COG4926	Phage-related protein	NA
UHGV-0062041_2	PHROG	phrog_372	tail protein	tail
UHGV-0062041_2	UniRef90	UniRef90_UPI0011075AE0	NA	NA
UHGV-0062041_2	eggNOG-mapper	1235799.C818_01005	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0062041_2	Pfam	PF05895	NA	DUF859
UHGV-0062041_2	COG	COG4675	Phage tail collar domain	NA
UHGV-0062041_2	Structural annotation	PF05895, MF_04116, NF010681, NF012201, COG3291	NA	NA
UHGV-0062041_3	PHROG	phrog_14030	NA	unknown function
UHGV-0062041_3	UniRef90	UniRef90_G5FC83	SH3b domain-containing protein	NA
UHGV-0062041_3	eggNOG-mapper	411461.DORFOR_00720	NA	NA
UHGV-0062041_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0062041_3	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0062041_3	Structural annotation	PF01471, PF18342, TIGR02869, TIGR04457, COG4991	NA	NA
UHGV-0062041_5	PHROG	phrog_6918	holin	lysis
UHGV-0062041_5	UniRef90	UniRef90_U2S4Z6	Phage holin, LL-H family	NA
UHGV-0062041_5	eggNOG-mapper	1226322.HMPREF1545_03575	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0062041_5	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0062041_5	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0062041_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0062041_6	PHROG	phrog_95	integrase	integration and excision
UHGV-0062041_6	UniRef90	UniRef90_A0A8J6JH47	Recombinase family protein	NA
UHGV-0062041_6	eggNOG-mapper	697281.Mahau_2563	resolvase	NA
UHGV-0062041_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0062041_6	Pfam	PF07508	Recombinase	Recombinase
UHGV-0062041_6	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0062041_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0062041_6	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0062041_7	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0062041_7	PHROG	phrog_15286	NA	unknown function
UHGV-0062041_7	UniRef90	UniRef90_A0A7W7Y3B6	Bro-N domain-containing protein	NA
UHGV-0062041_7	eggNOG-mapper	118005.AWNK01000005_gene1511	BRO family, N-terminal domain	NA
UHGV-0062041_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0062041_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0062041_7	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0062041_8	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0062041_8	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0062041_8	UniRef90	UniRef90_A0A174CJG2	DNA polymerase III polC-type	NA
UHGV-0062041_8	eggNOG-mapper	1232453.BAIF02000097_gene2773	EXOIII	NA
UHGV-0062041_8	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0062041_8	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0062041_8	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0062041_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0062041_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0062041_9	UniRef90	UniRef90_UPI001623B33F	helix-turn-helix transcriptional regulator	NA
UHGV-0062041_9	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-0062041_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062041_9	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0062041_9	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0062041_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0062041_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0062041_10	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0062041_10	eggNOG-mapper	742738.HMPREF9460_04041	sequence-specific DNA binding	NA
UHGV-0062041_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062041_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0062041_10	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0062041_14	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0062041_14	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0062041_21	eggNOG-mapper	997346.HMPREF9374_3915	Helix-turn-helix XRE-family like proteins	NA
UHGV-0062041_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062041_22	eggNOG-mapper	1274374.CBLK010000060_gene543	NA	NA
UHGV-0062041_23	PHROG	phrog_8470	NA	unknown function
UHGV-0062041_23	UniRef90	UniRef90_UPI0009F86D9A	PcfJ domain-containing protein	NA
UHGV-0062041_23	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-0062041_23	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0062041_23	Structural annotation	PF14284	NA	NA
UHGV-0062041_24	PHROG	phrog_15609	NA	unknown function
UHGV-0062041_24	UniRef90	UniRef90_UPI0013D36094	NA	NA
UHGV-0062041_24	eggNOG-mapper	1501230.ET33_21155	NA	NA
UHGV-0062041_24	Pfam	PF11300	NA	DUF3102
UHGV-0062041_24	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0062041_24	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0062041_26	eggNOG-mapper	1235792.C808_01244	NA	NA
UHGV-0062041_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0062041_29	eggNOG-mapper	536233.CLO_3655	NA	NA
UHGV-0062041_29	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0062041_30	PHROG	phrog_824	NA	unknown function
UHGV-0062041_30	UniRef90	UniRef90_A0A645FWL0	VRR-NUC domain-containing protein	NA
UHGV-0062041_30	eggNOG-mapper	1291050.JAGE01000001_gene480	VRR_NUC	NA
UHGV-0062041_30	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0062041_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0062041_32	UniRef90	UniRef90_UPI0011075693	NA	NA
UHGV-0062041_32	eggNOG-mapper	1121871.AUAT01000022_gene1841	NA	NA
UHGV-0062041_32	Pfam	PF07374	NA	DUF1492
UHGV-0062041_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0062041_32	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0062041_33	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0062041_33	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062041_33	UniRef90	UniRef90_A0A0J6H5D1	HNH endonuclease	NA
UHGV-0062041_33	eggNOG-mapper	1178540.BA70_19265	HNH endonuclease	NA
UHGV-0062041_33	AcrCatalog	cluster_19695	NA	NA
UHGV-0062041_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0062041_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0062041_33	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0062041_34	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0062041_34	eggNOG-mapper	1501230.ET33_21205	Phage terminase, small subunit	NA
UHGV-0062041_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0062041_34	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0062041_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0062041_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0062041_36	UniRef90	UniRef90_A0A101WI53	Terminase	NA
UHGV-0062041_36	eggNOG-mapper	1501230.ET33_21210	Terminase	NA
UHGV-0062041_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0062041_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0062041_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0062041_36	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0062041_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0062041_37	UniRef90	UniRef90_UPI001C3B2EDE	Phage portal protein	NA
UHGV-0062041_37	eggNOG-mapper	693746.OBV_20020	Phage portal protein	NA
UHGV-0062041_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0062041_37	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0062041_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0062041_37	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0062041_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0062041_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0062041_38	UniRef90	UniRef90_A0A4R3N395	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0062041_38	eggNOG-mapper	931276.Cspa_c10160	Belongs to the peptidase S14 family	NA
UHGV-0062041_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0062041_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0062041_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-0062041_39	UniRef90	UniRef90_UPI0019152A2F	phage major capsid protein	NA
UHGV-0062041_39	eggNOG-mapper	646529.Desaci_1301	TIGRFAM phage major capsid protein, HK97 family	NA
UHGV-0062041_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0062041_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0062041_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0062041_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0062041_41	PHROG	phrog_25	head closure Hc1	connector
UHGV-0062041_41	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0062041_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0062041_42	Structural annotation	PF05657	NA	NA
UHGV-0062041_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0062041_43	UniRef90	UniRef90_A0A0L8EXR7	Phage protein, HK97 gp10 family	NA
UHGV-0062041_43	eggNOG-mapper	1121342.AUCO01000004_gene643	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0062041_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0062041_43	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0062041_43	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0062041_44	PHROG	phrog_88	major tail protein	tail
UHGV-0062041_44	UniRef90	UniRef90_A0A7C6BMC6	Phage tail protein	NA
UHGV-0062041_44	eggNOG-mapper	1329516.JPST01000016_gene403	Phage major tail protein phi13	NA
UHGV-0062041_44	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0062041_44	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0062041_44	COG	COG5184	Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins	NA
UHGV-0062041_44	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0062041_47	eggNOG-mapper	1196031.ALEG01000039_gene1823	NA	NA
UHGV-0062041_49	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0062041_49	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0062041_49	UniRef90	UniRef90_A0A7C6FQN7	Phage tail tape measure protein	NA
UHGV-0062041_49	eggNOG-mapper	171693.BN988_01595	Phage-related minor tail protein	NA
UHGV-0062041_49	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0062041_49	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0062041_49	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0062041_49	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0062041_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0062041_50	UniRef90	UniRef90_A0A1W1Z4I2	Phage-related protein	NA
UHGV-0062041_50	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-0062041_50	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0062041_50	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0062041_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0062041_50	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0062041_52	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0062041_52	UniRef90	UniRef90_A0A3D2JIN2	SH3b domain-containing protein (Fragment)	NA
UHGV-0062041_52	eggNOG-mapper	1540257.JQMW01000009_gene3384	Phage minor structural protein	NA
UHGV-0062041_52	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0062041_52	COG	COG4926	Phage-related protein	NA