UHGV-0062092

Genome information

Genome length 42,905 bps

CDS count 72

Completeness 100.00% (complete)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062092
vOTU ID	vOTU-045044
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_71641
BioSample	SAMEA2338780
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.16
Jumbo phage	No

Genome content
Genome length	42,905 bps
GC content	54.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	90.91%
Average CDS length	544.46 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062092_1	PHROG	phrog_888	NA	unknown function
UHGV-0062092_1	UniRef90	UniRef90_UPI000BFBCD85	SHOCT domain-containing protein	NA
UHGV-0062092_1	eggNOG-mapper	1094508.Tsac_2417	Short C-terminal domain	NA
UHGV-0062092_1	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0062092_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0062092_4	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0062092_4	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0062092_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062092_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0062092_4	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0062092_5	KOfam	K14059	int; integrase	NA
UHGV-0062092_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0062092_5	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0062092_5	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0062092_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0062092_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0062092_5	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0062092_7	Structural annotation	PF12510	NA	NA
UHGV-0062092_8	PHROG	phrog_20016	NA	unknown function
UHGV-0062092_8	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0062092_8	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0062092_8	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0062092_9	PHROG	phrog_16490	NA	unknown function
UHGV-0062092_9	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0062092_10	PHROG	phrog_22984	NA	unknown function
UHGV-0062092_11	PHROG	phrog_21718	NA	unknown function
UHGV-0062092_11	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0062092_12	PHROG	phrog_3754	NA	unknown function
UHGV-0062092_12	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0062092_14	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0062092_14	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0062092_15	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062092_15	UniRef90	UniRef90_A0A0K9N8D8	Putative AP2 domain protein	NA
UHGV-0062092_15	eggNOG-mapper	742740.HMPREF9474_00071	NA	NA
UHGV-0062092_15	Pfam	PF00847	AP2 domain	AP2
UHGV-0062092_15	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0062092_18	PHROG	phrog_366	tail fiber protein	tail
UHGV-0062092_18	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0062092_18	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0062092_18	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0062092_19	PHROG	phrog_15303	NA	unknown function
UHGV-0062092_19	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0062092_21	KOfam	K07273	acm; lysozyme	NA
UHGV-0062092_21	PHROG	phrog_291	endolysin	lysis
UHGV-0062092_21	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0062092_21	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0062092_21	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0062092_21	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0062092_21	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0062092_22	PHROG	phrog_1382	NA	unknown function
UHGV-0062092_24	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0062092_24	UniRef90	UniRef90_UPI00082CBED4	NA	NA
UHGV-0062092_24	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0062092_24	Pfam	PF19789	NA	DUF6273
UHGV-0062092_24	Structural annotation	PF19789	NA	NA
UHGV-0062092_26	PHROG	phrog_3558	tail protein	tail
UHGV-0062092_26	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0062092_26	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0062092_26	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0062092_26	COG	COG4926	Phage-related protein	NA
UHGV-0062092_26	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0062092_27	UniRef90	UniRef90_A0A413WS74	MtfA protein	NA
UHGV-0062092_27	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0062092_27	COG	COG4722	Phage-related protein YomH	NA
UHGV-0062092_27	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0062092_28	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0062092_28	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0062092_28	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0062092_28	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0062092_28	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0062092_28	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0062092_28	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0062092_31	PHROG	phrog_885	major tail protein	tail
UHGV-0062092_31	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0062092_31	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0062092_32	Structural annotation	PF13554	NA	NA
UHGV-0062092_33	PHROG	phrog_17977	NA	unknown function
UHGV-0062092_33	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0062092_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0062092_35	PHROG	phrog_544	major head protein	head and packaging
UHGV-0062092_35	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0062092_35	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0062092_35	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0062092_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0062092_38	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0062092_38	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0062092_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0062092_38	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0062092_41	PHROG	phrog_8680	NA	unknown function
UHGV-0062092_41	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0062092_41	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0062092_41	Pfam	PF14386	NA	DUF4417
UHGV-0062092_41	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0062092_41	Structural annotation	PF14386	NA	NA
UHGV-0062092_42	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0062092_42	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0062092_42	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0062092_42	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0062092_42	COG	COG2369	NA	NA
UHGV-0062092_42	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0062092_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-0062092_44	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0062092_44	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0062092_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0062092_44	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0062092_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0062092_45	PHROG	phrog_10250	NA	unknown function
UHGV-0062092_45	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0062092_45	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0062092_45	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0062092_45	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0062092_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0062092_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0062092_45	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0062092_46	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0062092_46	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0062092_46	Structural annotation	PF04218	NA	NA
UHGV-0062092_47	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0062092_47	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0062092_47	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0062092_47	Pfam	PF07374	NA	DUF1492
UHGV-0062092_47	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0062092_49	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0062092_49	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0062092_49	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0062092_49	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0062092_49	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0062092_49	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0062092_49	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0062092_50	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0062092_50	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0062092_50	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0062092_50	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0062092_51	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0062092_51	UniRef90	UniRef90_A0A6M3LEH2	Putative methyltransferase	NA
UHGV-0062092_51	eggNOG-mapper	1247726.MIM_c10510	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0062092_51	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0062092_52	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0062092_52	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0062092_52	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0062092_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0062092_54	Structural annotation	PF11417	NA	NA
UHGV-0062092_55	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0062092_55	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0062092_55	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0062092_55	eggNOG-mapper	877411.JMMA01000002_gene2052	NA	NA
UHGV-0062092_55	Pfam	PF19808	NA	DUF6291
UHGV-0062092_55	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0062092_55	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0062092_55	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0062092_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0062092_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0062092_56	UniRef90	UniRef90_UPI001D0F2FBF	single-stranded DNA-binding protein	NA
UHGV-0062092_56	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0062092_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0062092_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0062092_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0062092_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0062092_56	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0062092_57	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0062092_57	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0062092_57	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0062092_57	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0062092_59	Structural annotation	PF09537	NA	NA
UHGV-0062092_60	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0062092_62	PHROG	phrog_4433	NA	unknown function
UHGV-0062092_62	UniRef90	UniRef90_UPI0015C58C2D	NA	NA
UHGV-0062092_62	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0062092_62	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0062092_62	Structural annotation	PF12120, NF007410	NA	NA
UHGV-0062092_65	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0062092_65	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0062092_66	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0062092_66	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0062092_66	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0062092_66	eggNOG-mapper	1051631.F8HGQ0_9CAUD	DNA binding	NA
UHGV-0062092_66	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0062092_66	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0062092_66	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0062092_67	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0062092_67	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0062092_68	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0062092_68	UniRef90	UniRef90_UPI001CBE4822	helix-turn-helix domain-containing protein	NA
UHGV-0062092_68	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0062092_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062092_68	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0062092_68	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0062092_69	Structural annotation	PF09202, MF_01819, NF041230, COG1321	NA	NA
UHGV-0062092_72	PHROG	phrog_888	NA	unknown function
UHGV-0062092_72	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0062092_72	Pfam	PF14471	NA	DUF4428
UHGV-0062092_72	Structural annotation	PF15947, PF14471	NA	NA