UHGV-0062111

Genome information

vOTU vOTU-019293

Genome length 47,129 bps

CDS count 65

Completeness 73.06% (medium-quality)

geNomad score 0.9691

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062111
vOTU ID	vOTU-019293
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_100452
BioSample	SAMEA2466924
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9691
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.6
Jumbo phage	No

Genome content
Genome length	47,129 bps
GC content	39.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	91.47%
Average CDS length	667.29 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062111_1	eggNOG-mapper	1268240.ATFI01000007_gene405	NA	NA
UHGV-0062111_1	Structural annotation	PF01835, NF033782, COG4743	NA	NA
UHGV-0062111_2	eggNOG-mapper	1121097.JCM15093_3258	NA	NA
UHGV-0062111_2	Structural annotation	PF16407, MF_04116, NF033597	NA	NA
UHGV-0062111_4	eggNOG-mapper	1268240.ATFI01000007_gene408	NA	NA
UHGV-0062111_4	Structural annotation	PF02010, MF_04116, NF041431, COG1361	NA	NA
UHGV-0062111_6	PHROG	phrog_26568	NA	unknown function
UHGV-0062111_6	eggNOG-mapper	1268240.ATFI01000007_gene409	Phage minor structural protein	NA
UHGV-0062111_6	COG	COG4926	Phage-related protein	NA
UHGV-0062111_7	PHROG	phrog_22157	NA	unknown function
UHGV-0062111_7	eggNOG-mapper	411476.BACOVA_03941	NA	NA
UHGV-0062111_7	Structural annotation	PF05629, PF17642, PF06605, TIGR01646, COG3157	NA	NA
UHGV-0062111_8	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0062111_8	UniRef90	UniRef90_A0A414ZF74	RNA polymerase sigma factor	NA
UHGV-0062111_8	eggNOG-mapper	435590.BVU_2824	Sigma-70, region 4	NA
UHGV-0062111_8	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0062111_8	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0062111_8	Structural annotation	PF08281, PF04542, MF_00962, NF008890, COG1595	NA	NA
UHGV-0062111_9	eggNOG-mapper	411476.BACOVA_03938	NA	NA
UHGV-0062111_10	PHROG	phrog_26233	NA	unknown function
UHGV-0062111_10	eggNOG-mapper	411476.BACOVA_03937	NA	NA
UHGV-0062111_11	PHROG	phrog_26705	NA	unknown function
UHGV-0062111_11	UniRef90	UniRef90_UPI00189CB9FC	phage tail tape measure protein	NA
UHGV-0062111_11	eggNOG-mapper	411476.BACOVA_03936	Phage-related minor tail protein	NA
UHGV-0062111_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0062111_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0062111_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0062111_11	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0062111_12	PHROG	phrog_26299	NA	unknown function
UHGV-0062111_12	eggNOG-mapper	411476.BACOVA_03935	NA	NA
UHGV-0062111_13	PHROG	phrog_6195	tail protein	tail
UHGV-0062111_13	UniRef90	UniRef90_UPI001E41A1F1	ABC transporter	NA
UHGV-0062111_13	eggNOG-mapper	411476.BACOVA_03934	NA	NA
UHGV-0062111_14	PHROG	phrog_25857	NA	unknown function
UHGV-0062111_14	eggNOG-mapper	411476.BACOVA_03933	NA	NA
UHGV-0062111_15	PHROG	phrog_24272	NA	unknown function
UHGV-0062111_15	eggNOG-mapper	435590.BVU_2829	NA	NA
UHGV-0062111_15	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0062111_16	PHROG	phrog_23418	NA	unknown function
UHGV-0062111_16	eggNOG-mapper	411476.BACOVA_03931	NA	NA
UHGV-0062111_16	Structural annotation	PF08873	NA	NA
UHGV-0062111_17	PHROG	phrog_26639	NA	unknown function
UHGV-0062111_17	eggNOG-mapper	657309.BXY_08360	NA	NA
UHGV-0062111_18	PHROG	phrog_23080	NA	unknown function
UHGV-0062111_18	eggNOG-mapper	411476.BACOVA_03929	NA	NA
UHGV-0062111_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0062111_19	UniRef90	UniRef90_A0A414ZFA4	Phage major capsid protein	NA
UHGV-0062111_19	eggNOG-mapper	411476.BACOVA_03928	Phage capsid family	NA
UHGV-0062111_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0062111_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0062111_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0062111_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0062111_20	KOfam	K06904	NA	NA
UHGV-0062111_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0062111_20	UniRef90	UniRef90_A0A414ZEG6	Phage prohead protein	NA
UHGV-0062111_20	eggNOG-mapper	411476.BACOVA_03927	Phage prohead protease, HK97 family	NA
UHGV-0062111_20	COG	COG3740	Phage head maturation protease	NA
UHGV-0062111_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0062111_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0062111_21	UniRef90	UniRef90_A0A414ZEJ5	Phage portal protein	NA
UHGV-0062111_21	eggNOG-mapper	411476.BACOVA_03926	Phage portal protein	NA
UHGV-0062111_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0062111_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0062111_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0062111_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0062111_22	UniRef90	UniRef90_A0A414ZEH3	PBSX family phage terminase large subunit	NA
UHGV-0062111_22	eggNOG-mapper	411476.BACOVA_03925	Phage terminase large subunit	NA
UHGV-0062111_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0062111_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0062111_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0062111_22	Structural annotation	PF04466, PF17289, MF_04145, MF_00034, TIGR01547, TIGR01630, COG1783, COG5362	NA	NA
UHGV-0062111_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0062111_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0062111_23	UniRef90	UniRef90_UPI00189FBAB5	terminase small subunit	NA
UHGV-0062111_23	eggNOG-mapper	435590.BVU_2837	Terminase small subunit	NA
UHGV-0062111_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0062111_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0062111_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0062111_24	PHROG	phrog_20533	NA	unknown function
UHGV-0062111_24	UniRef90	UniRef90_A0A2E6VDY8	PLDc_2 domain-containing protein	NA
UHGV-0062111_24	eggNOG-mapper	521097.Coch_0894	NA	NA
UHGV-0062111_24	Structural annotation	PF17941, NF010490, COG3886	NA	NA
UHGV-0062111_25	KOfam	K01784	galE, GALE; UDP-glucose 4-epimerase [EC:5.1.3.2]	NA
UHGV-0062111_25	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-0062111_25	UniRef90	UniRef90_A0A414ZEM0	SDR family NAD-dependent epimerase/dehydratase	NA
UHGV-0062111_25	eggNOG-mapper	411476.BACOVA_03922	Polysaccharide biosynthesis protein	NA
UHGV-0062111_25	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0062111_25	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-0062111_25	Structural annotation	PF04321, MF_01601, TIGR02197, COG0451	NA	NA
UHGV-0062111_26	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0062111_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0062111_26	UniRef90	UniRef90_A0A414Z801	Recombinase	NA
UHGV-0062111_26	eggNOG-mapper	1347393.HG726032_gene7467	Phage integrase family	NA
UHGV-0062111_26	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0062111_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0062111_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0062111_26	Structural annotation	PF00589, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0062111_29	PHROG	phrog_28609	NA	unknown function
UHGV-0062111_29	eggNOG-mapper	357276.EL88_11370	NA	NA
UHGV-0062111_31	eggNOG-mapper	1449126.JQKL01000051_gene3186	NA	NA
UHGV-0062111_33	UniRef90	UniRef90_UPI001D0934FC	NA	NA
UHGV-0062111_35	PHROG	phrog_16866	NA	unknown function
UHGV-0062111_35	UniRef90	UniRef90_A0A7Y1Y5S7	MgsA_C domain-containing protein	NA
UHGV-0062111_35	eggNOG-mapper	411476.BACOVA_03900	atpase related to the helicase subunit of the holliday junction resolvase	NA
UHGV-0062111_35	COG	COG2256	Replication-associated recombination protein RarA (DNA-dependent ATPase)	NA
UHGV-0062111_35	Structural annotation	PF12002	NA	NA
UHGV-0062111_36	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0062111_36	eggNOG-mapper	435590.BVU_2841	NA	NA
UHGV-0062111_36	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0062111_36	Structural annotation	PF20691, MF_00057, NF038299, COG1216	NA	NA
UHGV-0062111_37	PHROG	phrog_17622	NA	unknown function
UHGV-0062111_37	UniRef90	UniRef90_A0A414ZEI5	ParB domain-containing protein	NA
UHGV-0062111_37	eggNOG-mapper	657309.BXY_08610	ParB-like nuclease domain	NA
UHGV-0062111_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0062111_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0062111_37	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0062111_38	PHROG	phrog_18176	NA	unknown function
UHGV-0062111_38	eggNOG-mapper	435590.BVU_2843	NA	NA
UHGV-0062111_38	Structural annotation	PF12643, MF_01019, NF001610, COG0140	NA	NA
UHGV-0062111_44	PHROG	phrog_9133	NA	unknown function
UHGV-0062111_44	UniRef90	UniRef90_A0A139KWY0	SAM-dependent DNA methyltransferase	NA
UHGV-0062111_44	eggNOG-mapper	657309.BXY_08490	DNA restriction-modification system	NA
UHGV-0062111_44	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0062111_44	Structural annotation	PF02384, MF_02217, TIGR02469, COG2263	NA	NA
UHGV-0062111_45	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0062111_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0062111_45	UniRef90	UniRef90_A0A015V522	Phage integrase family protein	NA
UHGV-0062111_45	eggNOG-mapper	585543.HMPREF0969_03618	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0062111_45	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0062111_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0062111_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0062111_45	Structural annotation	PF00589, PF02899, MF_02055, NF040815, COG4973	NA	NA
UHGV-0062111_46	PHROG	phrog_17069	NA	unknown function
UHGV-0062111_46	UniRef90	UniRef90_F3PKH4	Conserved domain protein	NA
UHGV-0062111_46	eggNOG-mapper	411476.BACOVA_03896	NA	NA
UHGV-0062111_47	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062111_47	UniRef90	UniRef90_K5CR85	HNHc domain-containing protein	NA
UHGV-0062111_47	eggNOG-mapper	411476.BACOVA_03895	HNH endonuclease	NA
UHGV-0062111_47	PADLOC	HEase_00033	homing endonuclease	RM
UHGV-0062111_47	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0062111_47	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0062111_47	Structural annotation	PF13392	NA	NA
UHGV-0062111_48	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0062111_48	PHROG	phrog_18726	NA	unknown function
UHGV-0062111_48	UniRef90	UniRef90_A0A414ZEH5	Chromosome partitioning protein ParB	NA
UHGV-0062111_48	eggNOG-mapper	411476.BACOVA_03894	ParB-like nuclease domain	NA
UHGV-0062111_48	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0062111_48	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0062111_48	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0062111_48	Structural annotation	PF02195, PF07506, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0062111_49	PHROG	phrog_19578	NA	unknown function
UHGV-0062111_49	eggNOG-mapper	411476.BACOVA_03893	NA	NA
UHGV-0062111_49	Structural annotation	PF09827, MF_01471	NA	NA
UHGV-0062111_50	eggNOG-mapper	1268240.ATFI01000007_gene438	NA	NA
UHGV-0062111_50	Structural annotation	PF00679, MF_00707, NF010078, COG4492	NA	NA
UHGV-0062111_51	PHROG	phrog_16304	NA	unknown function
UHGV-0062111_51	UniRef90	UniRef90_A0A414ZEJ9	NA	NA
UHGV-0062111_51	eggNOG-mapper	657309.BXY_08680	DnaD domain protein	NA
UHGV-0062111_51	Pfam	PF19808	NA	DUF6291
UHGV-0062111_51	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0062111_51	Structural annotation	PF19808	NA	NA
UHGV-0062111_52	PHROG	phrog_824	NA	unknown function
UHGV-0062111_52	UniRef90	UniRef90_A0A414ZEU3	VRR-NUC domain-containing protein	NA
UHGV-0062111_52	eggNOG-mapper	1121098.HMPREF1534_01078	VRR_NUC	NA
UHGV-0062111_52	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0062111_53	PHROG	phrog_19572	NA	unknown function
UHGV-0062111_53	UniRef90	UniRef90_A0A414ZF81	NA	NA
UHGV-0062111_53	eggNOG-mapper	1121098.HMPREF1534_01077	NA	NA
UHGV-0062111_53	Pfam	PF14902	NA	DUF4494
UHGV-0062111_54	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0062111_54	UniRef90	UniRef90_A0A414ZEW6	NA	NA
UHGV-0062111_54	eggNOG-mapper	742767.HMPREF9456_02058	NA	NA
UHGV-0062111_54	Pfam	PF07105	NA	DUF1367
UHGV-0062111_54	Structural annotation	PF07105	NA	NA
UHGV-0062111_55	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0062111_55	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0062111_55	UniRef90	UniRef90_A0A414ZED6	Single-stranded DNA-binding protein	NA
UHGV-0062111_55	eggNOG-mapper	457424.BFAG_00905	Single-stranded DNA-binding protein	NA
UHGV-0062111_55	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0062111_55	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0062111_55	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0062111_55	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0062111_55	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0062111_56	PHROG	phrog_6244	NA	unknown function
UHGV-0062111_56	UniRef90	UniRef90_UPI000E1DF196	PD-(D/E)XK nuclease family protein	NA
UHGV-0062111_56	eggNOG-mapper	657309.BXY_08750	YqaJ viral recombinase family	NA
UHGV-0062111_56	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0062111_56	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0062111_57	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062111_57	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0062111_57	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0062111_57	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0062111_60	PHROG	phrog_18744	NA	unknown function
UHGV-0062111_60	eggNOG-mapper	411476.BACOVA_03879	NA	NA
UHGV-0062111_61	PHROG	phrog_21219	NA	unknown function
UHGV-0062111_63	eggNOG-mapper	449673.BACSTE_00559	NA	NA
UHGV-0062111_63	Structural annotation	NF033948	NA	NA
UHGV-0062111_64	UniRef90	UniRef90_UPI000E1C7E27	XRE family transcriptional regulator	NA
UHGV-0062111_64	eggNOG-mapper	657309.BXY_08820	NA	NA
UHGV-0062111_64	Structural annotation	PF01381, MF_00535, NF041575, COG1476	NA	NA
UHGV-0062111_65	eggNOG-mapper	1237149.C900_00425	NA	NA