UHGV-0062141

Genome information

Genome length 37,213 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062141
vOTU ID	vOTU-067242
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_89300
BioSample	SAMEA2466947
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.14
Jumbo phage	No

Genome content
Genome length	37,213 bps
GC content	51.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.58%
Average CDS length	633.17 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062141_1	UniRef90	UniRef90_A0A4P8LL40	Trypco2 domain-containing protein	NA
UHGV-0062141_1	eggNOG-mapper	1236542.BALM01000015_gene1067	NA	NA
UHGV-0062141_1	Structural annotation	PF19631	NA	NA
UHGV-0062141_3	eggNOG-mapper	997884.HMPREF1068_03099	NA	NA
UHGV-0062141_3	Structural annotation	PF11112	NA	NA
UHGV-0062141_4	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0062141_4	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0062141_4	UniRef90	UniRef90_A0A1V5VSP7	Methyltransferase	NA
UHGV-0062141_4	eggNOG-mapper	444158.MmarC6_0019	PFAM DNA methylase N-4 N-6 domain protein	NA
UHGV-0062141_4	PADLOC	MTase_II_00051	Type II methyltransferase	RM
UHGV-0062141_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0062141_4	COG	COG0863	DNA modification methylase	NA
UHGV-0062141_4	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0062141_6	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0062141_6	UniRef90	UniRef90_UPI0002F68456	KilA-N domain-containing protein	NA
UHGV-0062141_6	eggNOG-mapper	1121100.JCM6294_529	KilA-N domain	NA
UHGV-0062141_6	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0062141_6	Structural annotation	PF04383, NF033622	NA	NA
UHGV-0062141_9	UniRef90	UniRef90_UPI0018977E4B	Rad52/Rad22 family DNA repair protein	NA
UHGV-0062141_9	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0062141_9	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0062141_11	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-0062141_12	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0062141_12	eggNOG-mapper	742725.HMPREF9450_02078	NA	NA
UHGV-0062141_13	PHROG	phrog_23776	NA	unknown function
UHGV-0062141_13	eggNOG-mapper	679935.Alfi_0470	NA	NA
UHGV-0062141_14	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0062141_14	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0062141_14	UniRef90	UniRef90_A0A1M5AR60	DNA replication protein DnaC	NA
UHGV-0062141_14	eggNOG-mapper	445970.ALIPUT_01605	NA	NA
UHGV-0062141_14	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0062141_15	PHROG	phrog_824	NA	unknown function
UHGV-0062141_15	UniRef90	UniRef90_A0A143XP07	VRR-NUC domain protein	NA
UHGV-0062141_15	eggNOG-mapper	445970.ALIPUT_00026	NA	NA
UHGV-0062141_16	KOfam	K15352	pipB2; secreted effector protein PipB2	NA
UHGV-0062141_16	PHROG	phrog_31265	NA	unknown function
UHGV-0062141_16	UniRef90	UniRef90_UPI001898731D	pentapeptide repeat-containing protein	NA
UHGV-0062141_16	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0062141_16	Pfam	PF13599	Pentapeptide repeats (9 copies)	Pentapeptide_4
UHGV-0062141_16	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0062141_16	Pfam	PF19062	NA	DUF5758
UHGV-0062141_16	COG	COG1357	NA	NA
UHGV-0062141_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0062141_17	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0062141_17	UniRef90	UniRef90_UPI0018AB7658	DNA cytosine methyltransferase	NA
UHGV-0062141_17	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0062141_17	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0062141_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0062141_17	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0062141_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0062141_19	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0062141_19	UniRef90	UniRef90_A0A143XLK5	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	NA
UHGV-0062141_19	eggNOG-mapper	555500.I215_01798	Methyltransferase domain	NA
UHGV-0062141_19	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0062141_19	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-0062141_19	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0062141_19	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-0062141_19	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0062141_21	PHROG	phrog_874	NA	unknown function
UHGV-0062141_21	eggNOG-mapper	563008.HMPREF0665_02420	NA	NA
UHGV-0062141_21	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0062141_22	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-0062141_23	PHROG	phrog_8684	NA	unknown function
UHGV-0062141_23	UniRef90	UniRef90_UPI0018987415	YopX family protein	NA
UHGV-0062141_23	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-0062141_23	Pfam	PF09643	YopX protein	YopX
UHGV-0062141_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0062141_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0062141_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0062141_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0062141_25	UniRef90	UniRef90_A0A891TKW4	Cytosine-specific methyltransferase	NA
UHGV-0062141_25	eggNOG-mapper	1122991.BAIZ01000080_gene2882	Cytosine-specific methyltransferase	NA
UHGV-0062141_25	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0062141_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0062141_25	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0062141_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0062141_25	Structural annotation	PF00145, MF_01857, TIGR00675, COG0270	NA	NA
UHGV-0062141_29	Structural annotation	PF09035, NF040990	NA	NA
UHGV-0062141_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0062141_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0062141_30	UniRef90	UniRef90_A0A316NYX6	Terminase small subunit	NA
UHGV-0062141_30	eggNOG-mapper	742725.HMPREF9450_02101	COG NOG24226 non supervised orthologous group	NA
UHGV-0062141_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0062141_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0062141_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0062141_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0062141_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0062141_31	UniRef90	UniRef90_A0A497PCX3	Terminase	NA
UHGV-0062141_31	eggNOG-mapper	313596.RB2501_01375	Phage terminase large subunit	NA
UHGV-0062141_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0062141_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0062141_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0062141_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0062141_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0062141_32	eggNOG-mapper	435590.BVU_2835	Phage portal protein	NA
UHGV-0062141_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0062141_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0062141_33	KOfam	K06904	NA	NA
UHGV-0062141_33	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0062141_33	UniRef90	UniRef90_UPI000B385EC9	HK97 family phage prohead protease	NA
UHGV-0062141_33	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-0062141_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0062141_33	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0062141_33	COG	COG3740	Phage head maturation protease	NA
UHGV-0062141_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0062141_34	UniRef90	UniRef90_A0A4Y1WQ08	Nucleoid-structuring protein H-NS	NA
UHGV-0062141_34	eggNOG-mapper	449673.BACSTE_00580	Phage capsid family	NA
UHGV-0062141_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0062141_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0062141_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0062141_34	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0062141_36	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-0062141_40	Structural annotation	PF19266, TIGR02126, COG5437	NA	NA
UHGV-0062141_41	PHROG	phrog_33698	NA	unknown function
UHGV-0062141_41	UniRef90	UniRef90_UPI001873A18B	BACON domain-containing protein	NA
UHGV-0062141_41	eggNOG-mapper	357276.EL88_08390	NA	NA
UHGV-0062141_41	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0062141_42	eggNOG-mapper	742767.HMPREF9456_03308	NA	NA
UHGV-0062141_43	PHROG	phrog_14295	NA	unknown function
UHGV-0062141_43	UniRef90	UniRef90_A0A6G6XU42	Structural protein	NA
UHGV-0062141_43	eggNOG-mapper	445970.ALIPUT_01650	NA	NA
UHGV-0062141_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0062141_44	PHROG	phrog_21217	NA	unknown function
UHGV-0062141_44	eggNOG-mapper	742767.HMPREF9456_03364	NA	NA
UHGV-0062141_46	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0062141_46	Structural annotation	PF13385, COG3506	NA	NA
UHGV-0062141_48	PHROG	phrog_38864	NA	unknown function
UHGV-0062141_48	Structural annotation	PF13185, MF_04104, NF041673, COG2203	NA	NA
UHGV-0062141_50	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0062141_50	PHROG	phrog_894	endolysin	lysis
UHGV-0062141_50	UniRef90	UniRef90_A0A3D3YIT1	Peptidase M15	NA
UHGV-0062141_50	eggNOG-mapper	449673.BACSTE_00851	Peptidase M15	NA
UHGV-0062141_50	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0062141_50	COG	COG3108	NA	NA
UHGV-0062141_50	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0062141_51	Structural annotation	PF20647	NA	NA
UHGV-0062141_52	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0062141_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0062141_52	UniRef90	UniRef90_A0A4Y1WR36	Transposase	NA
UHGV-0062141_52	eggNOG-mapper	997884.HMPREF1068_03093	Belongs to the 'phage' integrase family	NA
UHGV-0062141_52	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0062141_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0062141_52	Structural annotation	PF13102, PF00589, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0062141_53	PHROG	phrog_1281	NA	unknown function
UHGV-0062141_53	UniRef90	UniRef90_A0A143XMA5	NA	NA
UHGV-0062141_53	eggNOG-mapper	1095752.HMPREF9969_2152	NA	NA
UHGV-0062141_53	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0062141_53	COG	COG3600	NA	NA
UHGV-0062141_53	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0062141_54	UniRef90	UniRef90_UPI0009315C73	helix-turn-helix domain-containing protein	NA
UHGV-0062141_54	eggNOG-mapper	693979.Bache_2301	COG NOG19093 non supervised orthologous group	NA
UHGV-0062141_54	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0062141_54	Structural annotation	PF12844, NF007257, COG3655	NA	NA