UHGV-0062193

Genome information

Genome length 40,330 bps

CDS count 50

Completeness 98.46% (high-quality)

geNomad score 0.9654

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062193
vOTU ID	vOTU-012944
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_91857
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.46% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9654
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.33
Jumbo phage	No

Genome content
Genome length	40,330 bps
GC content	31.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.67%
Average CDS length	736.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062193_2	KOfam	K01318	sspA; glutamyl endopeptidase [EC:3.4.21.19]	NA
UHGV-0062193_2	UniRef90	UniRef90_A0A1Q6MD51	Serine protease	NA
UHGV-0062193_2	eggNOG-mapper	585394.RHOM_16410	NA	NA
UHGV-0062193_3	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0062193_3	PHROG	phrog_4646	transposase	integration and excision
UHGV-0062193_3	UniRef90	UniRef90_A0A1Q6L9C0	Integrase catalytic domain-containing protein	NA
UHGV-0062193_3	eggNOG-mapper	518637.EUBIFOR_02567	NA	NA
UHGV-0062193_3	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0062193_3	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0062193_3	Structural annotation	PF07592, PF04218, NF033563, COG2826	NA	NA
UHGV-0062193_4	PHROG	phrog_13712	holin	lysis
UHGV-0062193_4	UniRef90	UniRef90_A0A6H2A073	Putative holin	NA
UHGV-0062193_4	eggNOG-mapper	796940.HMPREF9628_01284	NA	NA
UHGV-0062193_4	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0062193_5	eggNOG-mapper	755731.Clo1100_1178	NA	NA
UHGV-0062193_5	Pfam	PF03670	Uncharacterised protein family (UPF0184)	UPF0184
UHGV-0062193_8	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0062193_9	PHROG	phrog_13564	minor tail protein	tail
UHGV-0062193_9	eggNOG-mapper	1278311.AUAL01000001_gene19	NA	NA
UHGV-0062193_9	Structural annotation	PF16774, PF21766, TIGR02241, COG4722	NA	NA
UHGV-0062193_10	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0062193_10	UniRef90	UniRef90_A0A449BF56	Phage-related minor tail protein	NA
UHGV-0062193_10	eggNOG-mapper	1278311.AUAL01000001_gene20	phage tail tape measure protein	NA
UHGV-0062193_10	COG	COG4372	NA	NA
UHGV-0062193_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0062193_12	PHROG	phrog_88	major tail protein	tail
UHGV-0062193_12	UniRef90	UniRef90_A0A521IU44	Phage tail protein	NA
UHGV-0062193_12	eggNOG-mapper	441768.ACL_0617	phage major tail protein, phi13 family	NA
UHGV-0062193_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0062193_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0062193_13	PHROG	phrog_78	tail terminator	connector
UHGV-0062193_13	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0062193_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0062193_14	UniRef90	UniRef90_A0A1I6EBY4	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0062193_14	eggNOG-mapper	1382358.JHVN01000024_gene1711	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0062193_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0062193_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0062193_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0062193_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0062193_15	UniRef90	UniRef90_A0A841PSP7	SPP1 family predicted phage head-tail adaptor	NA
UHGV-0062193_16	PHROG	phrog_5223	neck protein	connector
UHGV-0062193_16	UniRef90	UniRef90_A9NFV0	Prohage DNA packaging protein, putative	NA
UHGV-0062193_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0062193_17	UniRef90	UniRef90_A0A2N1Q9W3	Phage major capsid protein	NA
UHGV-0062193_17	eggNOG-mapper	441768.ACL_0612	Phage capsid family	NA
UHGV-0062193_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0062193_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0062193_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0062193_18	KOfam	K06904	NA	NA
UHGV-0062193_18	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0062193_18	UniRef90	UniRef90_A0A3D0W3S0	HK97 family phage prohead protease	NA
UHGV-0062193_18	eggNOG-mapper	441768.ACL_0611	Phage prohead protease, HK97 family	NA
UHGV-0062193_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0062193_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0062193_18	COG	COG3740	Phage head maturation protease	NA
UHGV-0062193_18	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0062193_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0062193_19	UniRef90	UniRef90_A0A350RA62	Phage portal protein	NA
UHGV-0062193_19	eggNOG-mapper	441768.ACL_0610	Portal protein	NA
UHGV-0062193_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0062193_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0062193_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0062193_20	PHROG	phrog_2699	terminase large subunit	head and packaging
UHGV-0062193_20	UniRef90	UniRef90_A0A1V5UIA4	Phage Terminase	NA
UHGV-0062193_20	eggNOG-mapper	441768.ACL_0608	Phage Terminase	NA
UHGV-0062193_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0062193_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0062193_20	Structural annotation	PF20441, MF_04148, TIGR01547, COG4626	NA	NA
UHGV-0062193_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0062193_21	UniRef90	UniRef90_UPI001A2DFFF3	terminase large subunit	NA
UHGV-0062193_21	eggNOG-mapper	441768.ACL_0608	Phage Terminase	NA
UHGV-0062193_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0062193_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0062193_21	Structural annotation	PF03354	NA	NA
UHGV-0062193_23	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0062193_23	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0062193_24	PHROG	phrog_1066	NA	unknown function
UHGV-0062193_24	eggNOG-mapper	1033810.HLPCO_001806	NA	NA
UHGV-0062193_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0062193_25	PHROG	phrog_2945	NA	unknown function
UHGV-0062193_25	UniRef90	UniRef90_D9SLK6	(NiFe) hydrogenase maturation protein HypF	NA
UHGV-0062193_25	eggNOG-mapper	1408415.JHXL01000001_gene387	NA	NA
UHGV-0062193_26	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-0062193_26	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0062193_26	UniRef90	UniRef90_A0A1Q6MD77	Gamma-glutamylcyclotransferase	NA
UHGV-0062193_26	eggNOG-mapper	1410670.JHXF01000015_gene2284	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-0062193_26	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-0062193_26	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0062193_26	Structural annotation	PF06094, COG2105	NA	NA
UHGV-0062193_27	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0062193_27	UniRef90	UniRef90_A0A1Q6MCW0	Alpha-L-fucosidase	NA
UHGV-0062193_27	eggNOG-mapper	1408415.JHXL01000001_gene385	NA	NA
UHGV-0062193_27	AcrCatalog	cluster_16277	NA	NA
UHGV-0062193_27	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0062193_27	Structural annotation	PF12224	NA	NA
UHGV-0062193_29	UniRef90	UniRef90_R6R1P7	NA	NA
UHGV-0062193_29	Pfam	PF14192	NA	DUF4314
UHGV-0062193_30	eggNOG-mapper	441768.ACL_0597	NA	NA
UHGV-0062193_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0062193_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062193_32	UniRef90	UniRef90_A0A7C6N1R8	HNH endonuclease	NA
UHGV-0062193_32	eggNOG-mapper	441768.ACL_0936	endonuclease activity	NA
UHGV-0062193_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0062193_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0062193_33	KOfam	K00789	metK, MAT; S-adenosylmethionine synthetase [EC:2.5.1.6]	NA
UHGV-0062193_33	PHROG	phrog_1569	NA	unknown function
UHGV-0062193_33	UniRef90	UniRef90_A0A7C6N104	Methionine adenosyltransferase	NA
UHGV-0062193_33	eggNOG-mapper	441768.ACL_0600	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme	NA
UHGV-0062193_33	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-0062193_33	Pfam	PF02772	S-adenosylmethionine synthetase, central domain	S-AdoMet_synt_M
UHGV-0062193_33	Pfam	PF02773	S-adenosylmethionine synthetase, C-terminal domain	S-AdoMet_synt_C
UHGV-0062193_33	NCBIFam	TIGR01034.1	methionine adenosyltransferase	NA
UHGV-0062193_33	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-0062193_33	Structural annotation	PF02773, PF02772, PF00438, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-0062193_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0062193_34	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0062193_34	UniRef90	UniRef90_A0A7C6IZR1	Methyltransferase	NA
UHGV-0062193_34	eggNOG-mapper	1278311.AUAL01000001_gene39	chromosome segregation	NA
UHGV-0062193_34	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0062193_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0062193_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0062193_34	COG	COG0863	DNA modification methylase	NA
UHGV-0062193_34	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0062193_35	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0062193_35	eggNOG-mapper	290402.Cbei_1634	transposase activity	NA
UHGV-0062193_35	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0062193_35	Structural annotation	PF07141	NA	NA
UHGV-0062193_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0062193_36	UniRef90	UniRef90_R6QZ88	Sigma70_r4 domain-containing protein	NA
UHGV-0062193_36	eggNOG-mapper	1408415.JHXL01000003_gene1143	sigma factor activity	NA
UHGV-0062193_36	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0062193_36	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0062193_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0062193_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0062193_37	UniRef90	UniRef90_A0A3A6NAH2	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0062193_37	eggNOG-mapper	1278311.AUAL01000001_gene43	crossover junction endodeoxyribonuclease activity	NA
UHGV-0062193_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0062193_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0062193_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0062193_38	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0062193_38	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0062193_38	UniRef90	UniRef90_A0A224B000	DNA primase	NA
UHGV-0062193_38	eggNOG-mapper	1408415.JHXL01000003_gene1141	NA	NA
UHGV-0062193_38	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0062193_38	Pfam	PF13481	AAA domain	AAA_25
UHGV-0062193_38	COG	COG3598	RecA-family ATPase	NA
UHGV-0062193_38	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0062193_39	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0062193_39	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0062193_39	UniRef90	UniRef90_A0A3D0W3Y4	DEAD/DEAH box helicase	NA
UHGV-0062193_39	eggNOG-mapper	1278311.AUAL01000001_gene45	DEAD-like helicases superfamily	NA
UHGV-0062193_39	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0062193_39	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0062193_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0062193_39	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0062193_39	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0062193_40	PHROG	phrog_2698	NA	unknown function
UHGV-0062193_40	UniRef90	UniRef90_W0FMJ1	NA	NA
UHGV-0062193_40	eggNOG-mapper	1278311.AUAL01000001_gene46	NA	NA
UHGV-0062193_41	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0062193_41	UniRef90	UniRef90_A0A7X6YZ36	ATP-binding protein	NA
UHGV-0062193_41	eggNOG-mapper	1408415.JHXL01000003_gene1138	AAA domain	NA
UHGV-0062193_41	Pfam	PF13479	AAA domain	AAA_24
UHGV-0062193_41	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0062193_42	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062193_42	UniRef90	UniRef90_A0A7X6TPH9	NA	NA
UHGV-0062193_42	eggNOG-mapper	1278311.AUAL01000001_gene48	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0062193_42	Pfam	PF10926	NA	DUF2800
UHGV-0062193_42	COG	COG2887	RecB family exonuclease	NA
UHGV-0062193_42	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0062193_43	PHROG	phrog_7234	NA	unknown function
UHGV-0062193_44	UniRef90	UniRef90_A0A2K9AM69	Sigma70_r4_2 domain-containing protein	NA
UHGV-0062193_44	eggNOG-mapper	1120978.KB894081_gene88	NA	NA
UHGV-0062193_44	Structural annotation	PF08281, MF_00674, NF008895, COG2739	NA	NA
UHGV-0062193_45	eggNOG-mapper	994573.T472_0211175	NA	NA
UHGV-0062193_46	eggNOG-mapper	994573.T472_0211175	NA	NA
UHGV-0062193_46	Pfam	PF20277	C-terminal domain 11 of the ABC-three component (ABC-3C) systems	CTD11
UHGV-0062193_47	PHROG	phrog_6259	NA	unknown function
UHGV-0062193_47	eggNOG-mapper	555088.DealDRAFT_1606	NA	NA
UHGV-0062193_47	Pfam	PF20292	ABC-three component (ABC-3C) system Middle Component 7	MC7
UHGV-0062193_47	Structural annotation	PF20292, NF008565, COG1733	NA	NA
UHGV-0062193_48	PHROG	phrog_5467	NA	unknown function
UHGV-0062193_48	UniRef90	UniRef90_A0A1V5HKX1	NA	NA
UHGV-0062193_48	eggNOG-mapper	994573.T472_0211165	NA	NA
UHGV-0062193_48	Pfam	PF10088	NA	DUF2326
UHGV-0062193_48	COG	COG5293	NA	NA
UHGV-0062193_48	Structural annotation	PF13166, MF_00449, TIGR03185, COG5293	NA	NA
UHGV-0062193_49	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0062193_49	UniRef90	UniRef90_A0A1V6EBJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0062193_49	eggNOG-mapper	1131462.DCF50_p2469	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0062193_49	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0062193_49	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0062193_49	Structural annotation	PF13443, NF000090, COG3655	NA	NA