UHGV-0062197

Genome information

Genome length 28,970 bps

CDS count 46

Completeness 68.01% (medium-quality)

geNomad score 0.9691

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062197
vOTU ID	vOTU-028243
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_92165
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9691
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.24
Jumbo phage	No

Genome content
Genome length	28,970 bps
GC content	50.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	87.84%
Average CDS length	558.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062197_1	PHROG	phrog_18723	NA	unknown function
UHGV-0062197_2	eggNOG-mapper	665956.HMPREF1032_03261	NA	NA
UHGV-0062197_3	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0062197_3	eggNOG-mapper	693746.OBV_23870	NA	NA
UHGV-0062197_3	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0062197_4	PHROG	phrog_13046	NA	unknown function
UHGV-0062197_4	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0062197_4	Structural annotation	PF20387	NA	NA
UHGV-0062197_5	PHROG	phrog_371	major head protein	head and packaging
UHGV-0062197_5	UniRef90	UniRef90_R5AAY6	Mu-like_gpT domain-containing protein	NA
UHGV-0062197_5	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0062197_5	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0062197_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0062197_6	PHROG	phrog_24113	NA	unknown function
UHGV-0062197_6	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0062197_7	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0062197_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-0062197_10	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0062197_10	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0062197_11	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0062197_11	PHROG	phrog_216	integrase	integration and excision
UHGV-0062197_11	UniRef90	UniRef90_R5AM78	Integrase family protein	NA
UHGV-0062197_11	eggNOG-mapper	97138.C820_00621	integrase family	NA
UHGV-0062197_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0062197_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0062197_11	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0062197_12	PHROG	phrog_24361	terminase	head and packaging
UHGV-0062197_12	UniRef90	UniRef90_R5AHR8	Putative terminase large subunit	NA
UHGV-0062197_12	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-0062197_12	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0062197_12	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0062197_13	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0062197_13	UniRef90	UniRef90_A0A316MAA8	Xaa-His dipeptidase	NA
UHGV-0062197_13	eggNOG-mapper	97138.C820_00620	transposase activity	NA
UHGV-0062197_13	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0062197_13	Structural annotation	PF07141	NA	NA
UHGV-0062197_14	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-0062197_14	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0062197_14	UniRef90	UniRef90_R5AEV9	Cytotoxic translational repressor of toxin-antitoxin stability system	NA
UHGV-0062197_14	eggNOG-mapper	97139.C824_00468	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0062197_14	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0062197_14	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-0062197_14	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-0062197_15	eggNOG-mapper	1235792.C808_02931	NA	NA
UHGV-0062197_16	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0062197_16	UniRef90	UniRef90_R5AM83	HTH cro/C1-type domain-containing protein	NA
UHGV-0062197_16	eggNOG-mapper	445972.ANACOL_01859	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0062197_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0062197_16	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0062197_16	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0062197_18	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-0062197_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0062197_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0062197_20	UniRef90	UniRef90_R5AEW4	DNA helicase	NA
UHGV-0062197_20	eggNOG-mapper	1304284.L21TH_1915	Participates in initiation and elongation during chromosome replication	NA
UHGV-0062197_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0062197_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0062197_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0062197_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0062197_21	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0062197_21	UniRef90	UniRef90_A0A350TXF2	Phage_rep_org_N domain-containing protein	NA
UHGV-0062197_21	eggNOG-mapper	632245.CLP_1613	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0062197_21	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0062197_21	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0062197_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0062197_21	Structural annotation	PF06970, TIGR01714, COG5625	NA	NA
UHGV-0062197_22	UniRef90	UniRef90_A0A401LG95	MazG domain-containing protein	NA
UHGV-0062197_24	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0062197_24	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0062197_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0062197_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0062197_28	UniRef90	UniRef90_A0A401LG78	HTH cro/C1-type domain-containing protein	NA
UHGV-0062197_28	eggNOG-mapper	1378168.N510_00479	sequence-specific DNA binding	NA
UHGV-0062197_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062197_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0062197_28	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0062197_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0062197_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0062197_29	UniRef90	UniRef90_R5AMA1	Single-stranded DNA-binding protein	NA
UHGV-0062197_29	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0062197_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0062197_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0062197_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0062197_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0062197_29	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0062197_30	PHROG	phrog_1029	NA	unknown function
UHGV-0062197_30	eggNOG-mapper	1510440.A0A068EPX8_9CAUD	NA	NA
UHGV-0062197_30	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0062197_31	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0062197_31	UniRef90	UniRef90_A0A350U067	Replication terminator protein	NA
UHGV-0062197_31	eggNOG-mapper	1391647.AVSV01000003_gene1792	replication terminator protein, phage associated	NA
UHGV-0062197_33	Structural annotation	PF06257, TIGR02728, COG4466	NA	NA
UHGV-0062197_34	UniRef90	UniRef90_A0A350U070	HTH_17 domain-containing protein (Fragment)	NA
UHGV-0062197_34	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0062197_34	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0062197_38	PHROG	phrog_14088	NA	unknown function
UHGV-0062197_42	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0062197_42	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0062197_42	UniRef90	UniRef90_R5AEY7	Helix-turn-helix protein	NA
UHGV-0062197_42	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0062197_42	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0062197_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0062197_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0062197_44	eggNOG-mapper	1163671.JAGI01000002_gene1685	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-0062197_44	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0062197_44	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA