UHGV-0062438

Genome information

Genome length 42,218 bps

CDS count 64

Completeness 94.93% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062438
vOTU ID	vOTU-062481
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_68672
BioSample	SAMEA2338652
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.93% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.85
Jumbo phage	No

Genome content
Genome length	42,218 bps
GC content	44.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.41%
Average CDS length	606.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062438_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0062438_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0062438_2	UniRef90	UniRef90_UPI0004638103	helix-turn-helix domain-containing protein	NA
UHGV-0062438_2	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0062438_2	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0062438_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0062438_2	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0062438_4	Pfam	PF08681	NA	DUF1778
UHGV-0062438_6	PHROG	phrog_30542	NA	unknown function
UHGV-0062438_6	eggNOG-mapper	1048834.TC41_2503	NA	NA
UHGV-0062438_6	PADLOC	icity0043	NA	CRISPR-CAS
UHGV-0062438_10	UniRef90	UniRef90_A0A416P571	Phage_lysozyme2 domain-containing protein	NA
UHGV-0062438_10	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-0062438_10	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0062438_10	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0062438_11	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0062438_11	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0062438_11	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0062438_11	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0062438_12	PHROG	phrog_199	holin	lysis
UHGV-0062438_12	UniRef90	UniRef90_A0A174N8Q9	Phage-related holin (Lysis protein)	NA
UHGV-0062438_12	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0062438_12	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0062438_12	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0062438_12	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0062438_12	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0062438_14	eggNOG-mapper	86416.Clopa_1915	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0062438_14	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0062438_14	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0062438_17	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0062438_18	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0062438_18	PHROG	phrog_11037	NA	unknown function
UHGV-0062438_18	UniRef90	UniRef90_A0A7G5N2U5	Peptidase M23	NA
UHGV-0062438_18	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0062438_18	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0062438_18	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0062438_18	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0062438_18	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0062438_19	PHROG	phrog_6616	tail protein	tail
UHGV-0062438_19	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0062438_19	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0062438_19	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0062438_20	PHROG	phrog_1194	NA	unknown function
UHGV-0062438_20	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-0062438_20	Pfam	PF20458	NA	DUF6711
UHGV-0062438_20	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0062438_21	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0062438_21	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0062438_21	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0062438_21	COG	COG5283	Phage-related tail protein	NA
UHGV-0062438_22	PHROG	phrog_2066	NA	unknown function
UHGV-0062438_22	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-0062438_23	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0062438_23	UniRef90	UniRef90_UPI0011DE12FE	NA	NA
UHGV-0062438_23	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0062438_23	Structural annotation	PF19591	NA	NA
UHGV-0062438_24	PHROG	phrog_158	major tail protein	tail
UHGV-0062438_24	UniRef90	UniRef90_A0A1M7JWZ7	Phage tail tube protein, TTP	NA
UHGV-0062438_24	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0062438_24	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0062438_25	PHROG	phrog_78	tail terminator	connector
UHGV-0062438_25	eggNOG-mapper	1504823.CCMM01000008_gene1036	NA	NA
UHGV-0062438_25	Structural annotation	PF05657	NA	NA
UHGV-0062438_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0062438_26	UniRef90	UniRef90_A0A1I5MJ11	Phage protein, HK97 gp10 family	NA
UHGV-0062438_26	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0062438_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0062438_26	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0062438_26	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0062438_27	PHROG	phrog_2168	NA	unknown function
UHGV-0062438_27	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0062438_27	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0062438_28	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0062438_28	UniRef90	UniRef90_A0A1M6RMT1	Phage gp6-like head-tail connector protein	NA
UHGV-0062438_28	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0062438_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0062438_28	Structural annotation	PF05135	NA	NA
UHGV-0062438_29	PHROG	phrog_2724	NA	unknown function
UHGV-0062438_29	UniRef90	UniRef90_UPI00156EAC25	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0062438_29	eggNOG-mapper	1380384.JADN01000004_gene2274	This protein binds to 23S rRNA in the presence of protein L20	NA
UHGV-0062438_29	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0062438_29	COG	COG0261	Ribosomal protein L21	NA
UHGV-0062438_29	Structural annotation	PF07498	NA	NA
UHGV-0062438_30	PHROG	phrog_422	major head protein	head and packaging
UHGV-0062438_30	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0062438_30	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0062438_30	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0062438_31	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0062438_31	UniRef90	UniRef90_UPI001571586D	NA	NA
UHGV-0062438_31	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0062438_31	Pfam	PF14265	NA	DUF4355
UHGV-0062438_33	PHROG	phrog_34731	NA	unknown function
UHGV-0062438_33	eggNOG-mapper	365659.smi_0098	Cysteine-rich CPCC	NA
UHGV-0062438_33	Structural annotation	PF02699, MF_00369, TIGR00739, COG5475	NA	NA
UHGV-0062438_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0062438_34	UniRef90	UniRef90_A0A4P6M630	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0062438_34	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0062438_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0062438_34	Pfam	PF21814	NA	DUF6883
UHGV-0062438_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0062438_34	COG	COG2369	NA	NA
UHGV-0062438_34	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0062438_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0062438_35	UniRef90	UniRef90_UPI001652B712	phage portal protein	NA
UHGV-0062438_35	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0062438_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0062438_35	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0062438_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0062438_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0062438_36	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0062438_36	UniRef90	UniRef90_A0A174LL03	Phage terminase, large subunit, PBSX family	NA
UHGV-0062438_36	eggNOG-mapper	742733.HMPREF9469_01827	Terminase RNAseH like domain	NA
UHGV-0062438_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0062438_36	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0062438_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0062438_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0062438_36	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0062438_37	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0062438_37	UniRef90	UniRef90_UPI001D09B0C8	helix-turn-helix domain-containing protein	NA
UHGV-0062438_37	eggNOG-mapper	357809.Cphy_2972	transposase activity	NA
UHGV-0062438_37	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0062438_37	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0062438_37	Structural annotation	PF07141	NA	NA
UHGV-0062438_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0062438_38	UniRef90	UniRef90_A0A3R6NEA8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0062438_38	eggNOG-mapper	742740.HMPREF9474_04310	NA	NA
UHGV-0062438_38	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0062438_39	PHROG	phrog_7024	NA	unknown function
UHGV-0062438_40	PHROG	phrog_10714	NA	unknown function
UHGV-0062438_40	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0062438_42	Structural annotation	PF15188	NA	NA
UHGV-0062438_43	UniRef90	UniRef90_UPI001D099724	NA	NA
UHGV-0062438_43	Pfam	PF04448	NA	DUF551
UHGV-0062438_45	PHROG	phrog_8684	NA	unknown function
UHGV-0062438_45	UniRef90	UniRef90_R5RQ40	Phage related protein	NA
UHGV-0062438_45	eggNOG-mapper	478749.BRYFOR_07591	YopX protein	NA
UHGV-0062438_45	Pfam	PF09643	YopX protein	YopX
UHGV-0062438_45	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0062438_45	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0062438_46	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0062438_46	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0062438_46	UniRef90	UniRef90_A0A4R2LL80	Helicase-like protein	NA
UHGV-0062438_46	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0062438_46	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0062438_46	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0062438_46	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0062438_46	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0062438_46	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0062438_47	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062438_47	UniRef90	UniRef90_A0A318EGN0	VRR-NUC domain-containing protein	NA
UHGV-0062438_47	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-0062438_47	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0062438_47	Structural annotation	PF01870, MF_01490, NF002585, COG1591	NA	NA
UHGV-0062438_48	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0062438_48	UniRef90	UniRef90_A0A396QJJ4	Virulence-associated protein E	NA
UHGV-0062438_48	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-0062438_48	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0062438_48	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0062438_48	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0062438_49	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0062438_49	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0062438_49	UniRef90	UniRef90_UPI001896A801	DNA polymerase	NA
UHGV-0062438_49	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-0062438_49	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0062438_49	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0062438_49	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0062438_50	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0062438_50	UniRef90	UniRef90_UPI001923128B	NA	NA
UHGV-0062438_50	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-0062438_50	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0062438_50	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0062438_51	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0062438_51	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062438_51	UniRef90	UniRef90_UPI00189C4093	NA	NA
UHGV-0062438_51	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-0062438_51	PADLOC	DruK_00002	PD-(D/E)XK nuclease superfamily	Druantia
UHGV-0062438_51	Pfam	PF10926	NA	DUF2800
UHGV-0062438_51	COG	COG2887	RecB family exonuclease	NA
UHGV-0062438_51	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0062438_52	PHROG	phrog_22695	NA	unknown function
UHGV-0062438_52	eggNOG-mapper	1235799.C818_04196	NA	NA
UHGV-0062438_55	PHROG	phrog_36464	NA	unknown function
UHGV-0062438_55	eggNOG-mapper	1095750.HMPREF9970_1014	NA	NA
UHGV-0062438_56	PHROG	phrog_28292	NA	unknown function
UHGV-0062438_56	UniRef90	UniRef90_A0A7G5N2W1	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0062438_56	eggNOG-mapper	997350.HMPREF9129_1679	NA	NA
UHGV-0062438_58	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0062438_61	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0062438_61	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0062438_61	UniRef90	UniRef90_A0A7G5MY84	XRE family transcriptional regulator	NA
UHGV-0062438_61	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0062438_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062438_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0062438_61	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0062438_63	eggNOG-mapper	521095.Apar_1206	NA	NA
UHGV-0062438_63	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0062438_64	KOfam	K14059	int; integrase	NA
UHGV-0062438_64	PHROG	phrog_1	integrase	integration and excision
UHGV-0062438_64	UniRef90	UniRef90_UPI001D50B3EF	site-specific integrase	NA
UHGV-0062438_64	eggNOG-mapper	33035.JPJF01000071_gene4457	Phage integrase family	NA
UHGV-0062438_64	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0062438_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0062438_64	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0062438_64	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA