UHGV-0062477

Genome information

Genome length 33,044 bps

CDS count 59

Completeness 61.37% (medium-quality)

geNomad score 0.9732

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062477
vOTU ID	vOTU-035069
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_90046
BioSample	SAMEA2466974
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9732
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.44
Jumbo phage	No

Genome content
Genome length	33,044 bps
GC content	39.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.69%
Average CDS length	511.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062477_1	PHROG	phrog_18190	NA	unknown function
UHGV-0062477_1	eggNOG-mapper	1449050.JNLE01000003_gene3879	NA	NA
UHGV-0062477_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0062477_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0062477_6	UniRef90	UniRef90_UPI001D029144	transcriptional regulator	NA
UHGV-0062477_6	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-0062477_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0062477_6	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0062477_7	UniRef90	UniRef90_UPI001D0090A6	NA	NA
UHGV-0062477_7	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-0062477_7	Pfam	PF05339	NA	DUF739
UHGV-0062477_7	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0062477_7	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0062477_8	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0062477_8	Structural annotation	PF10544	NA	NA
UHGV-0062477_10	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0062477_10	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0062477_10	UniRef90	UniRef90_A0A265Q752	Bro-N domain-containing protein	NA
UHGV-0062477_10	eggNOG-mapper	1120978.KB894083_gene924	BRO family, N-terminal domain	NA
UHGV-0062477_10	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0062477_10	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0062477_10	COG	COG3617	Prophage antirepressor	NA
UHGV-0062477_10	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0062477_11	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0062477_11	PHROG	phrog_19890	NA	unknown function
UHGV-0062477_11	UniRef90	UniRef90_A0A352SFF8	SLT domain-containing protein	NA
UHGV-0062477_11	eggNOG-mapper	1410650.JHWL01000003_gene2854	lytic transglycosylase activity	NA
UHGV-0062477_11	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0062477_11	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0062477_11	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0062477_15	PHROG	phrog_10445	NA	unknown function
UHGV-0062477_15	UniRef90	UniRef90_A0A416G2C8	AAA_23 domain-containing protein	NA
UHGV-0062477_15	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0062477_15	Pfam	PF13476	AAA domain	AAA_23
UHGV-0062477_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0062477_15	Structural annotation	PF13514, NF000823, COG3593	NA	NA
UHGV-0062477_16	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0062477_16	PHROG	phrog_21084	recombinase	other
UHGV-0062477_16	UniRef90	UniRef90_R9KL45	AAA_23 domain-containing protein	NA
UHGV-0062477_16	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0062477_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0062477_17	Structural annotation	PF02237, MF_00257, NF037951, COG4013	NA	NA
UHGV-0062477_18	Structural annotation	PF09629, PF08962, MF_01354, NF007106, COG2139	NA	NA
UHGV-0062477_20	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0062477_20	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-0062477_20	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0062477_20	Pfam	PF03837	RecT family	RecT
UHGV-0062477_20	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0062477_21	KOfam	K06940	NA	NA
UHGV-0062477_21	PHROG	phrog_32498	NA	unknown function
UHGV-0062477_21	UniRef90	UniRef90_A0A173SAY4	Flagellin N-methylase	NA
UHGV-0062477_21	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0062477_21	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0062477_22	PHROG	phrog_25456	NA	unknown function
UHGV-0062477_23	KOfam	K00953	FLAD1; FAD synthetase [EC:2.7.7.2]	NA
UHGV-0062477_23	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0062477_23	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0062477_23	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0062477_23	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0062477_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0062477_23	Structural annotation	PF01507, NF002537, COG0175	NA	NA
UHGV-0062477_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0062477_24	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0062477_24	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0062477_24	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0062477_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0062477_25	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0062477_25	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0062477_25	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0062477_25	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0062477_25	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0062477_26	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0062477_26	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0062477_26	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0062477_26	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0062477_26	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0062477_29	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0062477_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0062477_33	PHROG	phrog_874	NA	unknown function
UHGV-0062477_33	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0062477_33	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0062477_33	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0062477_34	PHROG	phrog_10714	NA	unknown function
UHGV-0062477_34	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0062477_34	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0062477_36	PHROG	phrog_19106	NA	unknown function
UHGV-0062477_36	UniRef90	UniRef90_A0A1C5S1S5	Group I intron endonuclease	NA
UHGV-0062477_36	eggNOG-mapper	397290.C810_01509	NA	NA
UHGV-0062477_36	Structural annotation	TIGR01453	NA	NA
UHGV-0062477_37	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062477_37	UniRef90	UniRef90_A0A173Z8S3	NUMOD4 motif	NA
UHGV-0062477_37	eggNOG-mapper	679190.HMPREF0650_0103	NUMOD4 motif	NA
UHGV-0062477_37	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0062477_37	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0062477_37	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0062477_37	Pfam	PF08220	DeoR-like helix-turn-helix domain	HTH_DeoR
UHGV-0062477_39	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0062477_39	PHROG	phrog_29443	NA	unknown function
UHGV-0062477_39	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0062477_39	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0062477_39	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0062477_39	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0062477_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0062477_39	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0062477_40	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0062477_40	PHROG	phrog_23072	DNA methyltransferase	other
UHGV-0062477_40	UniRef90	UniRef90_A0A1Q6UYZ8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0062477_40	eggNOG-mapper	665956.HMPREF1032_00142	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0062477_40	PADLOC	DrmMII_00008	DrmMII	DISARM
UHGV-0062477_40	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0062477_40	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0062477_41	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0062477_41	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-0062477_41	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-0062477_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0062477_41	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0062477_42	PHROG	phrog_9804	NA	unknown function
UHGV-0062477_42	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0062477_42	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0062477_42	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0062477_42	Structural annotation	PF11417	NA	NA
UHGV-0062477_45	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0062477_45	UniRef90	UniRef90_R6C2W3	DNA binding domain excisionase family	NA
UHGV-0062477_45	eggNOG-mapper	411489.CLOL250_01459	Excisionase from transposon Tn916	NA
UHGV-0062477_45	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0062477_45	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0062477_45	Structural annotation	PF09035, TIGR01764, COG2771, COG3311	NA	NA
UHGV-0062477_46	KOfam	K14059	int; integrase	NA
UHGV-0062477_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0062477_46	UniRef90	UniRef90_R6CA87	Site-specific recombinase phage integrase family	NA
UHGV-0062477_46	eggNOG-mapper	658088.HMPREF0987_01414	Phage integrase family	NA
UHGV-0062477_46	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0062477_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0062477_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0062477_46	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0062477_48	PHROG	phrog_21718	NA	unknown function
UHGV-0062477_48	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0062477_48	Structural annotation	NF033819	NA	NA
UHGV-0062477_49	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0062477_50	PHROG	phrog_16490	NA	unknown function
UHGV-0062477_50	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0062477_51	UniRef90	UniRef90_R7B8I7	Ribbon-helix-helix protein CopG family	NA
UHGV-0062477_51	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0062477_51	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0062477_51	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0062477_52	Structural annotation	PF07875	NA	NA
UHGV-0062477_53	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0062477_53	UniRef90	UniRef90_R7BII5	AntA domain-containing protein	NA
UHGV-0062477_53	eggNOG-mapper	1460640.JCM19046_3538	ORF6N domain	NA
UHGV-0062477_53	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0062477_53	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0062477_54	PHROG	phrog_20016	NA	unknown function
UHGV-0062477_54	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0062477_54	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0062477_54	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0062477_55	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0062477_56	PHROG	phrog_1233	NA	unknown function
UHGV-0062477_56	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0062477_57	Structural annotation	PF10944	NA	NA