UHGV-0062515

Genome information

Genome length 33,177 bps

CDS count 39

Completeness 90.40% (high-quality)

geNomad score 0.9685

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062515
vOTU ID	vOTU-014312
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_86074
BioSample	SAMEA2338672
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9685
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.4
Jumbo phage	No

Genome content
Genome length	33,177 bps
GC content	55.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	90.29%
Average CDS length	771.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062515_2	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0062515_2	UniRef90	UniRef90_A0A1C5TZ14	NA	NA
UHGV-0062515_2	eggNOG-mapper	545696.HOLDEFILI_01135	NA	NA
UHGV-0062515_2	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0062515_2	Pfam	PF19481	NA	DUF6017
UHGV-0062515_2	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0062515_2	Structural annotation	PF19481, TIGR04176, COG3355	NA	NA
UHGV-0062515_3	KOfam	K02529	lacI, galR; LacI family transcriptional regulator	NA
UHGV-0062515_3	PHROG	phrog_11145	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0062515_3	UniRef90	UniRef90_R7I485	Transcriptional regulator LacI family	NA
UHGV-0062515_3	eggNOG-mapper	1321778.HMPREF1982_02387	helix_turn _helix lactose operon repressor	NA
UHGV-0062515_3	Pfam	PF00356	Bacterial regulatory proteins, lacI family	LacI
UHGV-0062515_3	Pfam	PF13377	Periplasmic binding protein-like domain	Peripla_BP_3
UHGV-0062515_3	COG	COG1609	DNA-binding transcriptional regulator, LacI/PurR family	NA
UHGV-0062515_3	Structural annotation	PF00532, PF00356, MF_01277, NF007743, COG1609	NA	NA
UHGV-0062515_4	UniRef90	UniRef90_A0A1C6CAG0	NYN domain	NA
UHGV-0062515_4	eggNOG-mapper	1226322.HMPREF1545_00653	NYN domain	NA
UHGV-0062515_4	Pfam	PF01936	NYN domain	NYN
UHGV-0062515_4	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0062515_4	Structural annotation	PF01936, MF_01161, TIGR00288, COG1432	NA	NA
UHGV-0062515_5	KOfam	K14059	int; integrase	NA
UHGV-0062515_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0062515_5	UniRef90	UniRef90_A0A1M5E9I2	Site-specific recombinase XerD	NA
UHGV-0062515_5	eggNOG-mapper	760568.Desku_1398	Belongs to the 'phage' integrase family	NA
UHGV-0062515_5	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0062515_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0062515_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0062515_5	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0062515_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0062515_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0062515_7	UniRef90	UniRef90_A0A3D2GZZ7	HTH cro/C1-type domain-containing protein	NA
UHGV-0062515_7	eggNOG-mapper	1235790.C805_00397	Helix-turn-helix XRE-family like proteins	NA
UHGV-0062515_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062515_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0062515_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0062515_8	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0062515_8	eggNOG-mapper	1458462.JNLK01000001_gene1183	NA	NA
UHGV-0062515_8	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0062515_8	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0062515_9	UniRef90	UniRef90_A0A1Q6JK14	HTH_17 domain-containing protein	NA
UHGV-0062515_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0062515_9	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0062515_10	PHROG	phrog_6088	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0062515_10	UniRef90	UniRef90_A0A5D3I7V8	DNA primase	NA
UHGV-0062515_10	eggNOG-mapper	760568.Desku_3516	DNA primase	NA
UHGV-0062515_10	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0062515_10	Structural annotation	PF06048, PF01807, PF18662, PF19898, MF_00974, MF_00016, TIGR01391, NF011296, COG5519, COG0358	NA	NA
UHGV-0062515_12	PHROG	phrog_15609	NA	unknown function
UHGV-0062515_12	eggNOG-mapper	717606.PaecuDRAFT_3106	NA	NA
UHGV-0062515_12	Pfam	PF11300	NA	DUF3102
UHGV-0062515_12	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0062515_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0062515_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0062515_14	UniRef90	UniRef90_A0A843J304	Single-stranded DNA-binding protein	NA
UHGV-0062515_14	eggNOG-mapper	266117.Rxyl_0045	Single-strand binding protein family	NA
UHGV-0062515_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0062515_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0062515_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0062515_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0062515_14	Structural annotation	PF00436, MF_00984, NF006445, COG0629	NA	NA
UHGV-0062515_16	KOfam	K07334	higB-1; toxin HigB-1	NA
UHGV-0062515_16	PHROG	phrog_3066	toxin of TA system	moron, auxiliary metabolic gene and host takeover
UHGV-0062515_16	UniRef90	UniRef90_A0A1C6DG75	Plasmid maintenance system killer protein	NA
UHGV-0062515_16	eggNOG-mapper	556261.HMPREF0240_00147	RelE-like toxin of type II toxin-antitoxin system HigB	NA
UHGV-0062515_16	Pfam	PF05015	RelE-like toxin of type II toxin-antitoxin system HigB	HigB-like_toxin
UHGV-0062515_16	COG	COG3549	Plasmid maintenance system killer protein	NA
UHGV-0062515_16	Structural annotation	PF05015, TIGR02385, COG3549	NA	NA
UHGV-0062515_17	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0062515_17	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0062515_17	UniRef90	UniRef90_Q0AZN6	Putative plasmid maintenance system antidote protein, XRE family	NA
UHGV-0062515_17	eggNOG-mapper	335541.Swol_0483	Addiction module antidote protein, HigA	NA
UHGV-0062515_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062515_17	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0062515_17	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0062515_17	Structural annotation	PF12844, MF_00535, TIGR02607, COG3093, COG2856	NA	NA
UHGV-0062515_18	UniRef90	UniRef90_A0A292SSH8	CopG family transcriptional regulator	NA
UHGV-0062515_18	eggNOG-mapper	1235799.C818_03880	NA	NA
UHGV-0062515_18	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0062515_19	UniRef90	UniRef90_A0A7X5J2L7	CopG family transcriptional regulator	NA
UHGV-0062515_19	eggNOG-mapper	478749.BRYFOR_07643	NA	NA
UHGV-0062515_19	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0062515_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0062515_21	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062515_21	UniRef90	UniRef90_A0A3D2H4J2	Endonuclease	NA
UHGV-0062515_21	eggNOG-mapper	411465.PEPMIC_00028	HNH nucleases	NA
UHGV-0062515_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0062515_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0062515_22	eggNOG-mapper	189425.PGRAT_19340	Phage terminase, small subunit	NA
UHGV-0062515_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0062515_23	UniRef90	UniRef90_A0A2V2G2T2	Terminase large subunit	NA
UHGV-0062515_23	eggNOG-mapper	1329516.JPST01000016_gene393	Phage Terminase	NA
UHGV-0062515_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0062515_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0062515_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0062515_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0062515_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0062515_24	UniRef90	UniRef90_A0A1Q6JK00	Phage portal protein	NA
UHGV-0062515_24	eggNOG-mapper	1403313.AXBR01000002_gene4327	Phage portal protein	NA
UHGV-0062515_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0062515_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0062515_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0062515_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0062515_25	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0062515_25	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0062515_25	UniRef90	UniRef90_UPI00111FE7B1	Clp protease ClpP	NA
UHGV-0062515_25	eggNOG-mapper	1121334.KB911068_gene2290	Belongs to the peptidase S14 family	NA
UHGV-0062515_25	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0062515_25	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0062515_25	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0062515_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0062515_26	UniRef90	UniRef90_I4D3F3	Phage capsid family protein	NA
UHGV-0062515_26	eggNOG-mapper	646529.Desaci_1301	TIGRFAM phage major capsid protein, HK97 family	NA
UHGV-0062515_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0062515_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0062515_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0062515_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0062515_28	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0062515_28	UniRef90	UniRef90_A0A7U0A1P4	Phage gp6-like head-tail connector protein	NA
UHGV-0062515_28	eggNOG-mapper	1286171.EAL2_c11070	Phage gp6-like head-tail connector protein	NA
UHGV-0062515_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0062515_28	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0062515_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0062515_29	PHROG	phrog_25	head closure Hc1	connector
UHGV-0062515_29	UniRef90	UniRef90_A0A2T5UCX8	SPP1 family predicted phage head-tail adaptor	NA
UHGV-0062515_29	eggNOG-mapper	1329516.JPST01000016_gene400	Phage head-tail joining protein	NA
UHGV-0062515_29	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0062515_29	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0062515_29	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0062515_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0062515_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0062515_30	UniRef90	UniRef90_UPI00189B87CA	HK97 gp10 family phage protein	NA
UHGV-0062515_30	eggNOG-mapper	573061.Clocel_3972	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-0062515_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0062515_30	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0062515_30	Structural annotation	TIGR01725	NA	NA
UHGV-0062515_31	eggNOG-mapper	411470.RUMGNA_02072	NA	NA
UHGV-0062515_31	Structural annotation	PF05657	NA	NA
UHGV-0062515_32	PHROG	phrog_88	major tail protein	tail
UHGV-0062515_32	UniRef90	UniRef90_A0A6N9Q756	Phage tail protein	NA
UHGV-0062515_32	eggNOG-mapper	509191.AEDB02000020_gene3252	TIGRFAM phage major tail protein, phi13 family	NA
UHGV-0062515_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0062515_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0062515_35	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0062515_35	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-0062515_35	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0062515_35	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0062515_35	Structural annotation	TIGR01760	NA	NA
UHGV-0062515_36	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0062515_37	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0062515_37	UniRef90	UniRef90_UPI001C3F0E1A	phage tail protein	NA
UHGV-0062515_37	eggNOG-mapper	1536769.P40081_01145	Prophage endopeptidase tail	NA
UHGV-0062515_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0062515_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0062515_37	COG	COG4926	Phage-related protein	NA
UHGV-0062515_39	eggNOG-mapper	1236976.JCM16418_3108	Belongs to the glycosyl hydrolase 2 family	NA
UHGV-0062515_39	COG	COG3250	Beta-galactosidase/beta-glucuronidase	NA