UHGV-0062605

Genome information

Genome length 29,408 bps

CDS count 43

Completeness 76.83% (medium-quality)

geNomad score 0.9677

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062605
vOTU ID	vOTU-015216
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_70454
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9677
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.46
Jumbo phage	No

Genome content
Genome length	29,408 bps
GC content	50.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	85.64%
Average CDS length	591.84 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062605_1	COG	COG5283	Phage-related tail protein	NA
UHGV-0062605_2	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0062605_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0062605_3	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0062605_3	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0062605_4	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0062605_4	UniRef90	UniRef90_UPI0006C0E497	NA	NA
UHGV-0062605_4	eggNOG-mapper	1294142.CINTURNW_1697	NA	NA
UHGV-0062605_4	Structural annotation	PF19591	NA	NA
UHGV-0062605_5	PHROG	phrog_158	major tail protein	tail
UHGV-0062605_5	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-0062605_5	eggNOG-mapper	1499683.CCFF01000017_gene2926	Phage tail tube protein, TTP	NA
UHGV-0062605_5	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0062605_5	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0062605_6	Structural annotation	PF05657	NA	NA
UHGV-0062605_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0062605_7	UniRef90	UniRef90_K5A327	Putative phage protein	NA
UHGV-0062605_7	eggNOG-mapper	1499683.CCFF01000014_gene3905	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0062605_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0062605_7	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0062605_7	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0062605_8	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0062605_10	PHROG	phrog_283	major head protein	head and packaging
UHGV-0062605_10	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-0062605_10	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-0062605_10	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0062605_10	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0062605_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0062605_11	UniRef90	UniRef90_UPI0018A8F1CB	phage scaffolding protein	NA
UHGV-0062605_11	eggNOG-mapper	645991.Sgly_0339	PFAM Phage minor structural	NA
UHGV-0062605_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0062605_11	Structural annotation	PF06810	NA	NA
UHGV-0062605_13	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0062605_13	UniRef90	UniRef90_A0A0D8BQM0	Phage head morphogenesis, SPP1 gp7 family domain protein	NA
UHGV-0062605_13	eggNOG-mapper	1294142.CINTURNW_1685	Phage Mu protein F like protein	NA
UHGV-0062605_13	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0062605_13	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0062605_13	COG	COG2369	NA	NA
UHGV-0062605_13	Structural annotation	PF04233, PF00583, TIGR01641, NF000487, COG1246, COG2369	NA	NA
UHGV-0062605_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0062605_14	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-0062605_14	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0062605_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0062605_14	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0062605_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0062605_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0062605_15	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0062605_15	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-0062605_15	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0062605_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0062605_15	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0062605_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0062605_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0062605_15	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0062605_16	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0062605_16	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0062605_16	UniRef90	UniRef90_UPI001CA794C1	terminase small subunit	NA
UHGV-0062605_16	eggNOG-mapper	1196028.ALEF01000043_gene470	Terminase small subunit	NA
UHGV-0062605_16	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0062605_16	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0062605_16	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0062605_18	Structural annotation	TIGR01636	NA	NA
UHGV-0062605_25	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0062605_25	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0062605_25	UniRef90	UniRef90_UPI000B8A750C	AAA family ATPase	NA
UHGV-0062605_25	eggNOG-mapper	397290.C810_01519	NA	NA
UHGV-0062605_25	Pfam	PF13481	AAA domain	AAA_25
UHGV-0062605_25	COG	COG0305	Replicative DNA helicase	NA
UHGV-0062605_25	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0062605_26	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0062605_26	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0062605_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0062605_26	Structural annotation	PF07106, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0062605_27	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0062605_27	UniRef90	UniRef90_A0A0M2NJW5	NA	NA
UHGV-0062605_27	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0062605_27	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0062605_27	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0062605_27	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0062605_28	PHROG	phrog_18107	NA	unknown function
UHGV-0062605_28	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0062605_28	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0062605_28	Structural annotation	PF05037	NA	NA
UHGV-0062605_29	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0062605_29	UniRef90	UniRef90_A0A847VZU9	AAA family ATPase	NA
UHGV-0062605_29	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0062605_29	Pfam	PF13479	AAA domain	AAA_24
UHGV-0062605_29	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0062605_31	PHROG	phrog_30234	NA	unknown function
UHGV-0062605_31	eggNOG-mapper	33035.JPJF01000135_gene5083	NA	NA
UHGV-0062605_32	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0062605_32	UniRef90	UniRef90_A0A174V495	C-5 cytosine-specific DNA methylase	NA
UHGV-0062605_32	eggNOG-mapper	1226322.HMPREF1545_03521	C-5 cytosine-specific DNA methylase	NA
UHGV-0062605_32	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0062605_33	PHROG	phrog_7713	NA	unknown function
UHGV-0062605_33	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0062605_33	COG	COG1357	NA	NA
UHGV-0062605_35	eggNOG-mapper	768710.DesyoDRAFT_1143	NA	NA
UHGV-0062605_37	UniRef90	UniRef90_A0A374DVN3	DNA-binding protein	NA
UHGV-0062605_37	eggNOG-mapper	411468.CLOSCI_02402	NA	NA
UHGV-0062605_38	UniRef90	UniRef90_UPI001959A9A5	helix-turn-helix domain-containing protein	NA
UHGV-0062605_38	eggNOG-mapper	1227352.C173_01737	Helix-turn-helix XRE-family like proteins	NA
UHGV-0062605_38	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0062605_40	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0062605_40	UniRef90	UniRef90_A0A417U5W7	XRE family transcriptional regulator	NA
UHGV-0062605_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062605_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0062605_40	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0062605_41	KOfam	K14059	int; integrase	NA
UHGV-0062605_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0062605_41	UniRef90	UniRef90_UPI00189A8F69	site-specific integrase	NA
UHGV-0062605_41	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0062605_41	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0062605_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0062605_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0062605_41	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0062605_42	PHROG	phrog_25867	tail protein	tail
UHGV-0062605_42	UniRef90	UniRef90_A0A2V2D7D5	SASA domain-containing protein	NA
UHGV-0062605_42	Pfam	PF03629	Carbohydrate esterase, sialic acid-specific acetylesterase	SASA
UHGV-0062605_42	COG	COG3317	Outer membrane beta-barrel protein assembly factor BamC	NA
UHGV-0062605_43	KOfam	K01624	FBA, fbaA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]	NA
UHGV-0062605_43	PHROG	phrog_32062	NA	unknown function
UHGV-0062605_43	UniRef90	UniRef90_R6INH0	Fructose-1 6-bisphosphate aldolase class II	NA
UHGV-0062605_43	eggNOG-mapper	1232443.BAIA02000095_gene3662	Fructose-bisphosphate aldolase class-II	NA
UHGV-0062605_43	Pfam	PF01116	Fructose-bisphosphate aldolase class-II	F_bP_aldolase
UHGV-0062605_43	NCBIFam	TIGR01859.1	class II fructose-1,6-bisphosphate aldolase	NA
UHGV-0062605_43	COG	COG0191	Fructose/tagatose bisphosphate aldolase	NA