UHGV-0062737

Genome information

Genome length 28,181 bps

CDS count 39

Completeness 63.29% (medium-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062737
vOTU ID	vOTU-038029
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_71219
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.27
Jumbo phage	No

Genome content
Genome length	28,181 bps
GC content	41.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	94.84%
Average CDS length	687.08 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062737_1	PHROG	phrog_8680	NA	unknown function
UHGV-0062737_1	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0062737_1	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0062737_1	Pfam	PF14386	NA	DUF4417
UHGV-0062737_1	Structural annotation	PF14386	NA	NA
UHGV-0062737_2	PHROG	phrog_9479	NA	unknown function
UHGV-0062737_2	Structural annotation	PF15529	NA	NA
UHGV-0062737_3	PHROG	phrog_33130	NA	unknown function
UHGV-0062737_3	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0062737_5	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0062737_5	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0062737_5	UniRef90	UniRef90_A0A173R907	Terminase small subunit	NA
UHGV-0062737_5	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0062737_5	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0062737_5	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0062737_5	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0062737_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0062737_6	PHROG	phrog_10250	NA	unknown function
UHGV-0062737_6	UniRef90	UniRef90_A0A417Q599	PBSX family phage terminase large subunit	NA
UHGV-0062737_6	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0062737_6	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0062737_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0062737_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0062737_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0062737_6	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0062737_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-0062737_8	UniRef90	UniRef90_A0A173R9C0	Phage portal protein, putative, A118 family	NA
UHGV-0062737_8	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0062737_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0062737_9	PHROG	phrog_1129	holin	lysis
UHGV-0062737_9	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0062737_9	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0062737_9	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0062737_9	Structural annotation	PF16079	NA	NA
UHGV-0062737_10	PHROG	phrog_419	NA	unknown function
UHGV-0062737_10	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-0062737_10	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0062737_10	Structural annotation	PF14083	NA	NA
UHGV-0062737_11	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0062737_11	UniRef90	UniRef90_A0A373MXM0	Phage capsid protein	NA
UHGV-0062737_11	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0062737_11	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0062737_11	COG	COG2369	NA	NA
UHGV-0062737_11	Structural annotation	PF06152	NA	NA
UHGV-0062737_13	PHROG	phrog_3754	NA	unknown function
UHGV-0062737_13	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0062737_15	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0062737_15	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0062737_16	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0062737_16	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-0062737_16	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0062737_17	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0062737_17	PHROG	phrog_2104	NA	unknown function
UHGV-0062737_17	eggNOG-mapper	97139.C824_02644	Helix-turn-helix XRE-family like proteins	NA
UHGV-0062737_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062737_17	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0062737_18	PHROG	phrog_21718	NA	unknown function
UHGV-0062737_18	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0062737_19	PHROG	phrog_22984	NA	unknown function
UHGV-0062737_20	PHROG	phrog_16490	NA	unknown function
UHGV-0062737_20	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0062737_21	PHROG	phrog_20016	NA	unknown function
UHGV-0062737_21	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-0062737_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0062737_22	PHROG	phrog_28802	NA	unknown function
UHGV-0062737_22	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0062737_23	UniRef90	UniRef90_UPI001D15D4B7	cysteine-rich KTR domain-containing protein	NA
UHGV-0062737_23	eggNOG-mapper	476272.RUMHYD_01773	Cysteine-rich KTR	NA
UHGV-0062737_23	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0062737_23	Structural annotation	PF14205, NF041070	NA	NA
UHGV-0062737_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0062737_24	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0062737_24	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0062737_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0062737_24	Structural annotation	PF06810	NA	NA
UHGV-0062737_25	PHROG	phrog_544	major head protein	head and packaging
UHGV-0062737_25	UniRef90	UniRef90_A0A173R8P5	S-l_SbsC_C domain-containing protein	NA
UHGV-0062737_25	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0062737_25	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0062737_25	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0062737_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0062737_26	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0062737_27	PHROG	phrog_1233	NA	unknown function
UHGV-0062737_27	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0062737_27	eggNOG-mapper	1232453.BAIF02000011_gene3355	NA	NA
UHGV-0062737_28	PHROG	phrog_3366	NA	unknown function
UHGV-0062737_28	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0062737_28	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0062737_29	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0062737_29	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0062737_29	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0062737_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0062737_29	Structural annotation	PF11114	NA	NA
UHGV-0062737_30	PHROG	phrog_3266	tail completion	connector
UHGV-0062737_30	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0062737_30	Structural annotation	PF12691	NA	NA
UHGV-0062737_31	PHROG	phrog_3099	NA	unknown function
UHGV-0062737_31	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0062737_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0062737_32	PHROG	phrog_11299	NA	unknown function
UHGV-0062737_32	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0062737_32	Structural annotation	PF10666	NA	NA
UHGV-0062737_33	PHROG	phrog_706	NA	unknown function
UHGV-0062737_33	UniRef90	UniRef90_UPI00156F9D1C	Gp15 family bacteriophage protein	NA
UHGV-0062737_33	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0062737_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0062737_33	Structural annotation	PF06854	NA	NA
UHGV-0062737_34	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0062737_34	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0062737_34	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0062737_34	COG	COG1511	NA	NA
UHGV-0062737_35	PHROG	phrog_1194	NA	unknown function
UHGV-0062737_35	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0062737_36	PHROG	phrog_6616	tail protein	tail
UHGV-0062737_36	UniRef90	UniRef90_UPI0015714EA8	tail fiber domain-containing protein	NA
UHGV-0062737_36	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0062737_36	COG	COG4926	Phage-related protein	NA
UHGV-0062737_36	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0062737_38	PHROG	phrog_19695	NA	unknown function
UHGV-0062737_38	eggNOG-mapper	476272.RUMHYD_01788	NA	NA
UHGV-0062737_39	eggNOG-mapper	476272.RUMHYD_00002	NA	NA