UHGV-0062747

Genome information

Genome length 38,759 bps

CDS count 50

Completeness 96.10% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062747
vOTU ID	vOTU-075212
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_98813
BioSample	NA
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.83
Jumbo phage	No

Genome content
Genome length	38,759 bps
GC content	40.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	89.81%
Average CDS length	699.48 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062747_1	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0062747_2	PHROG	phrog_18190	NA	unknown function
UHGV-0062747_2	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0062747_3	PHROG	phrog_1194	NA	unknown function
UHGV-0062747_3	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0062747_3	Pfam	PF20458	NA	DUF6711
UHGV-0062747_3	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0062747_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0062747_4	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0062747_4	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0062747_4	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0062747_4	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0062747_6	PHROG	phrog_706	NA	unknown function
UHGV-0062747_6	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-0062747_6	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0062747_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0062747_6	Structural annotation	PF06854	NA	NA
UHGV-0062747_7	PHROG	phrog_11299	NA	unknown function
UHGV-0062747_7	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0062747_7	Structural annotation	PF10666	NA	NA
UHGV-0062747_8	PHROG	phrog_3099	NA	unknown function
UHGV-0062747_8	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0062747_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0062747_9	PHROG	phrog_3266	tail completion	connector
UHGV-0062747_9	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0062747_9	Structural annotation	PF20765	NA	NA
UHGV-0062747_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0062747_10	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0062747_10	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0062747_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0062747_10	Structural annotation	PF11114	NA	NA
UHGV-0062747_11	PHROG	phrog_3366	NA	unknown function
UHGV-0062747_11	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0062747_11	Pfam	PF20536	NA	DUF6751
UHGV-0062747_11	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0062747_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0062747_12	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0062747_12	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0062747_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0062747_13	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0062747_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0062747_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0062747_14	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-0062747_14	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0062747_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0062747_14	Structural annotation	PF06810	NA	NA
UHGV-0062747_15	PHROG	phrog_2616	NA	unknown function
UHGV-0062747_15	Structural annotation	PF01281	NA	NA
UHGV-0062747_16	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0062747_16	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0062747_16	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0062747_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0062747_18	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-0062747_18	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0062747_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0062747_18	COG	COG2369	NA	NA
UHGV-0062747_18	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0062747_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0062747_19	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-0062747_19	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0062747_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0062747_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0062747_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0062747_20	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-0062747_20	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0062747_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0062747_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0062747_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0062747_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0062747_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0062747_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0062747_21	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-0062747_21	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0062747_21	Pfam	PF07374	NA	DUF1492
UHGV-0062747_21	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0062747_22	eggNOG-mapper	1235802.C823_04693	NA	NA
UHGV-0062747_24	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0062747_24	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0062747_24	UniRef90	UniRef90_A0A2N0ULU7	SF3 helicase domain-containing protein	NA
UHGV-0062747_24	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0062747_24	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0062747_24	Pfam	PF19263	NA	DUF5906
UHGV-0062747_24	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0062747_24	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0062747_24	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0062747_24	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0062747_25	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0062747_25	UniRef90	UniRef90_A0A374ND86	NA	NA
UHGV-0062747_25	eggNOG-mapper	1410670.JHXF01000015_gene2272	NA	NA
UHGV-0062747_25	Pfam	PF05037	NA	DUF669
UHGV-0062747_25	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0062747_26	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0062747_26	UniRef90	UniRef90_A0A374N329	VRR-NUC domain-containing protein	NA
UHGV-0062747_26	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0062747_26	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0062747_26	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0062747_27	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0062747_27	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0062747_27	UniRef90	UniRef90_A0A374N1T8	Helicase	NA
UHGV-0062747_27	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0062747_27	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0062747_27	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0062747_27	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0062747_27	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0062747_27	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0062747_28	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0062747_28	UniRef90	UniRef90_UPI001A9B3ECC	AAA family ATPase	NA
UHGV-0062747_28	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0062747_28	Pfam	PF13479	AAA domain	AAA_24
UHGV-0062747_28	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0062747_29	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0062747_29	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-0062747_29	eggNOG-mapper	1027396.LMOSA_21290	Siphovirus Gp157	NA
UHGV-0062747_29	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0062747_29	Structural annotation	PF05565	NA	NA
UHGV-0062747_30	PHROG	phrog_15609	NA	unknown function
UHGV-0062747_30	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0062747_30	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0062747_30	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0062747_31	PHROG	phrog_8470	NA	unknown function
UHGV-0062747_31	UniRef90	UniRef90_UPI0019175B9C	PcfJ domain-containing protein	NA
UHGV-0062747_31	eggNOG-mapper	1501230.ET33_02200	PcfJ-like protein	NA
UHGV-0062747_31	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0062747_31	Structural annotation	PF14284	NA	NA
UHGV-0062747_34	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0062747_36	UniRef90	UniRef90_A0A2N0ULS1	YozE_SAM_like domain-containing protein	NA
UHGV-0062747_36	Pfam	PF06855	YozE SAM-like fold	YozE_SAM_like
UHGV-0062747_38	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0062747_39	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0062747_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0062747_39	UniRef90	UniRef90_A0A412L7W1	XRE family transcriptional regulator	NA
UHGV-0062747_39	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-0062747_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062747_39	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0062747_40	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0062747_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0062747_40	UniRef90	UniRef90_A0A412L7U4	XRE family transcriptional regulator	NA
UHGV-0062747_40	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-0062747_40	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0062747_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062747_40	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0062747_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0062747_41	UniRef90	UniRef90_UPI0007E1B082	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0062747_41	eggNOG-mapper	1232443.BAIA02000106_gene3117	NA	NA
UHGV-0062747_41	Structural annotation	PF06114	NA	NA
UHGV-0062747_42	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0062747_42	UniRef90	UniRef90_A0A412UNZ9	XRE family transcriptional regulator	NA
UHGV-0062747_42	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-0062747_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062747_42	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0062747_43	UniRef90	UniRef90_UPI001D095173	protein-export chaperone SecB	NA
UHGV-0062747_43	eggNOG-mapper	1031288.AXAA01000014_gene407	Preprotein translocase subunit SecB	NA
UHGV-0062747_43	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-0062747_44	PHROG	phrog_10226	NA	unknown function
UHGV-0062747_44	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-0062747_44	Structural annotation	COG4127	NA	NA
UHGV-0062747_46	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0062747_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0062747_46	UniRef90	UniRef90_A0A374NFM5	XRE family transcriptional regulator	NA
UHGV-0062747_46	eggNOG-mapper	1196029.ALIM01000022_gene950	Helix-turn-helix XRE-family like proteins	NA
UHGV-0062747_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0062747_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0062747_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0062747_46	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0062747_47	KOfam	K14059	int; integrase	NA
UHGV-0062747_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0062747_47	UniRef90	UniRef90_A0A412L7T7	Site-specific integrase	NA
UHGV-0062747_47	eggNOG-mapper	1540257.JQMW01000011_gene2033	Phage integrase family	NA
UHGV-0062747_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0062747_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0062747_47	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0062747_50	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0062747_50	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0062747_50	UniRef90	UniRef90_UPI0015F455B4	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0062747_50	eggNOG-mapper	411474.COPEUT_02341	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	NA
UHGV-0062747_50	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0062747_50	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0062747_50	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0062747_50	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0062747_50	Structural annotation	PF07638, MF_00245, TIGR02954, COG1595	NA	NA