UHGV-0062762

Genome information

Genome length 21,320 bps

CDS count 28

Completeness 52.62% (medium-quality)

geNomad score 0.9682

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062762
vOTU ID	vOTU-039619
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_67320
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9682
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-6.23
Jumbo phage	No

Genome content
Genome length	21,320 bps
GC content	53.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	87.63%
Average CDS length	669.86 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062762_1	KOfam	K03498	trkH, trkG, ktrB, ktrD; trk/ktr system potassium uptake protein	NA
UHGV-0062762_1	PHROG	phrog_14873	NA	unknown function
UHGV-0062762_1	UniRef90	UniRef90_A0A173Z9V6	Ktr system potassium uptake protein B	NA
UHGV-0062762_1	eggNOG-mapper	411483.FAEPRAA2165_01796	NA	NA
UHGV-0062762_1	Pfam	PF02386	Cation transport protein	TrkH
UHGV-0062762_1	COG	COG0168	Trk-type K+ transport system, membrane component	NA
UHGV-0062762_2	KOfam	K01258	pepT; tripeptide aminopeptidase [EC:3.4.11.4]	NA
UHGV-0062762_2	PHROG	phrog_1977	NA	unknown function
UHGV-0062762_2	UniRef90	UniRef90_A0A173Z9Z2	Tripeptide aminopeptidase	NA
UHGV-0062762_2	eggNOG-mapper	411483.FAEPRAA2165_01797	Cleaves the N-terminal amino acid of tripeptides	NA
UHGV-0062762_2	Pfam	PF01546	Peptidase family M20/M25/M40	Peptidase_M20
UHGV-0062762_2	NCBIFam	NF003976.0	tripeptide aminopeptidase PepT	NA
UHGV-0062762_2	COG	COG2195	Di- or tripeptidase	NA
UHGV-0062762_3	UniRef90	UniRef90_A0A173Z8M0	NA	NA
UHGV-0062762_3	Pfam	PF12989	NA	DUF3873
UHGV-0062762_4	UniRef90	UniRef90_A0A173Z8D4	Chorismate--pyruvate lyase	NA
UHGV-0062762_4	eggNOG-mapper	1410630.JNKP01000001_gene2050	NA	NA
UHGV-0062762_5	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0062762_6	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-0062762_7	PHROG	phrog_16490	NA	unknown function
UHGV-0062762_7	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0062762_10	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-0062762_10	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0062762_10	Structural annotation	PF10723	NA	NA
UHGV-0062762_13	UniRef90	UniRef90_R6DRH1	Putative TnpX site-specific recombinase	NA
UHGV-0062762_13	eggNOG-mapper	742740.HMPREF9474_00056	NA	NA
UHGV-0062762_13	Structural annotation	COG4068	NA	NA
UHGV-0062762_14	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0062762_14	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0062762_14	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0062762_17	PHROG	phrog_15303	NA	unknown function
UHGV-0062762_19	KOfam	K07273	acm; lysozyme	NA
UHGV-0062762_19	PHROG	phrog_291	endolysin	lysis
UHGV-0062762_19	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0062762_19	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0062762_19	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0062762_19	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0062762_19	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0062762_22	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0062762_22	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0062762_22	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0062762_22	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0062762_22	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0062762_22	COG	COG4926	Phage-related protein	NA
UHGV-0062762_22	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0062762_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0062762_23	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0062762_23	eggNOG-mapper	439292.Bsel_2995	tail component	NA
UHGV-0062762_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-0062762_23	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0062762_24	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0062762_24	UniRef90	UniRef90_A0A2A7B6K1	TMP_3 domain-containing protein	NA
UHGV-0062762_24	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0062762_24	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0062762_24	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0062762_24	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0062762_24	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0062762_27	PHROG	phrog_88	major tail protein	tail
UHGV-0062762_27	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0062762_27	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0062762_27	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0062762_27	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0062762_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0062762_28	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0062762_28	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0062762_28	Structural annotation	TIGR01725	NA	NA